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Zinc in PDB 3gc5: Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One

Enzymatic activity of Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One

All present enzymatic activity of Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One:
2.4.2.29;

Protein crystallography data

The structure of Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One, PDB code: 3gc5 was solved by T.Ritschel, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.200, 65.000, 70.800, 90.00, 96.20, 90.00
R / Rfree (%) 16.2 / 19.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One (pdb code 3gc5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One, PDB code: 3gc5:

Zinc binding site 1 out of 1 in 3gc5

Go back to Zinc Binding Sites List in 3gc5
Zinc binding site 1 out of 1 in the Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Trna-Guanine Transglycosylase in Complex with 6-Amino-4-(2- Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin- 8-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn390

b:14.3
occ:1.00
ND1 A:HIS349 2.2 13.9 1.0
SG A:CYS320 2.3 15.4 1.0
SG A:CYS318 2.3 18.5 1.0
SG A:CYS323 2.3 16.9 1.0
CE1 A:HIS349 3.0 14.8 1.0
CB A:CYS318 3.2 19.1 1.0
CB A:CYS323 3.3 12.9 1.0
CB A:CYS320 3.3 15.5 1.0
CG A:HIS349 3.4 11.5 1.0
CB A:HIS349 3.8 13.4 1.0
N A:CYS323 3.9 15.9 1.0
N A:CYS320 4.1 16.4 1.0
CA A:HIS349 4.1 10.4 1.0
CA A:CYS320 4.2 15.4 1.0
CA A:CYS323 4.2 17.5 1.0
NE2 A:HIS349 4.2 12.8 1.0
CD2 A:HIS349 4.4 12.8 1.0
O A:HIS349 4.5 11.4 1.0
CA A:CYS318 4.6 19.7 1.0
C A:CYS320 4.6 16.7 1.0
O A:CYS320 4.6 17.6 1.0
C A:CYS318 4.7 22.3 1.0
CB A:VAL322 4.7 12.9 1.0
C A:HIS349 4.8 10.5 1.0
O A:CYS318 4.8 20.7 1.0
C A:VAL322 4.9 17.2 1.0
CD2 A:LEU314 5.0 37.2 0.6

Reference:

T.Ritschel, P.C.Kohler, G.Neudert, A.Heine, F.Diederich, G.Klebe. How to Replace the Residual Solvation Shell of Polar Active Site Residues to Achieve Nanomolar Inhibition of Trna-Guanine Transglycosylase Chemmedchem V. 4 2012 2009.
ISSN: ISSN 1860-7179
PubMed: 19894214
DOI: 10.1002/CMDC.200900343
Page generated: Sat Sep 26 10:15:45 2020
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