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Zinc in PDB 3ga3: Crystal Structure of the C-Terminal Domain of Human MDA5

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Domain of Human MDA5, PDB code: 3ga3 was solved by P.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 28.410, 60.920, 36.443, 90.00, 102.58, 90.00
R / Rfree (%) 18 / 20.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the C-Terminal Domain of Human MDA5 (pdb code 3ga3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the C-Terminal Domain of Human MDA5, PDB code: 3ga3:

Zinc binding site 1 out of 1 in 3ga3

Go back to Zinc Binding Sites List in 3ga3
Zinc binding site 1 out of 1 in the Crystal Structure of the C-Terminal Domain of Human MDA5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the C-Terminal Domain of Human MDA5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:12.1
occ:1.00
SG A:CYS964 2.3 10.8 1.0
SG A:CYS907 2.4 10.2 1.0
SG A:CYS962 2.4 10.7 1.0
SG A:CYS910 2.4 12.3 1.0
CB A:CYS907 3.1 9.8 1.0
CB A:CYS962 3.2 10.1 1.0
CB A:CYS964 3.2 9.4 1.0
CB A:CYS910 3.4 11.2 1.0
N A:CYS910 3.7 11.9 1.0
CA A:CYS910 4.1 11.2 1.0
N A:CYS964 4.2 11.0 1.0
CA A:CYS964 4.3 12.4 1.0
CB A:GLN966 4.3 9.8 1.0
CG1 A:VAL912 4.3 13.7 1.0
O A:HOH135 4.4 34.5 1.0
NE1 A:TRP968 4.6 8.7 1.0
CA A:CYS907 4.6 11.2 1.0
CA A:CYS962 4.6 9.5 1.0
CB A:ASN909 4.7 12.5 1.0
CZ2 A:TRP968 4.8 10.7 1.0
C A:ASN909 4.8 13.3 1.0
C A:CYS910 4.8 12.4 1.0
N A:GLN966 4.9 10.1 1.0
C A:CYS964 4.9 11.0 1.0
ND2 A:ASN909 4.9 13.8 1.0

Reference:

P.Li, X.Li, C.Lu. Crystal Structure of the C-Terminal Domain of Human MDA5 To Be Published.
Page generated: Thu Oct 24 13:40:00 2024

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