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Zinc in PDB 3g9y: Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa

Protein crystallography data

The structure of Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa, PDB code: 3g9y was solved by F.E.Loughlin, A.P.Mcgrath, M.Lee, J.M.Guss, J.P.Mackay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.69 / 1.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 54.519, 54.519, 48.071, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 23.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa (pdb code 3g9y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa, PDB code: 3g9y:

Zinc binding site 1 out of 1 in 3g9y

Go back to Zinc Binding Sites List in 3g9y
Zinc binding site 1 out of 1 in the Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Second Zinc Finger From ZRANB2/ZNF265 Bound to 6 Nt Ssrna Sequence Agguaa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:17.3
occ:1.00
SG A:CYS74 2.3 24.2 1.0
SG A:CYS88 2.3 23.7 1.0
SG A:CYS71 2.3 23.5 1.0
SG A:CYS85 2.4 23.8 1.0
CB A:CYS85 3.1 22.9 1.0
CB A:CYS71 3.2 24.6 1.0
CB A:CYS74 3.3 24.6 1.0
CB A:CYS88 3.4 23.8 1.0
N A:CYS74 3.7 24.3 1.0
N A:CYS88 3.8 23.4 1.0
CA A:CYS74 4.1 24.4 1.0
CA A:CYS88 4.1 23.5 1.0
CB A:ASN76 4.5 23.2 1.0
CA A:CYS85 4.6 22.9 1.0
CA A:CYS71 4.6 23.9 1.0
CB A:THR73 4.7 25.1 1.0
C A:CYS74 4.7 24.3 1.0
C A:THR73 4.7 24.4 1.0
CB A:MET87 4.7 22.2 0.3
C A:CYS88 4.8 23.2 1.0
N A:SER75 4.8 24.1 1.0
N A:ASN76 4.8 23.5 1.0
CB A:MET87 4.9 23.3 0.7
CB A:THR90 4.9 22.4 1.0
C A:MET87 4.9 22.7 1.0
OG1 A:THR90 4.9 24.3 1.0
N A:ASN89 5.0 22.8 1.0
O A:HOH96 5.0 32.5 1.0

Reference:

F.E.Loughlin, R.E.Mansfield, P.M.Vaz, A.P.Mcgrath, S.Setiyaputra, R.Gamsjaeger, E.S.Chen, B.J.Morris, J.M.Guss, J.P.Mackay. The Zinc Fingers of the Sr-Like Protein ZRANB2 Are Single-Stranded Rna-Binding Domains That Recognize 5' Splice Site-Like Sequences Proc.Natl.Acad.Sci.Usa V. 106 5581 2009.
ISSN: ISSN 0027-8424
PubMed: 19304800
DOI: 10.1073/PNAS.0802466106
Page generated: Sat Sep 26 10:15:08 2020
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