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Zinc in PDB 3g8r: Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472

Protein crystallography data

The structure of Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472, PDB code: 3g8r was solved by V.N.Malashkevich, R.Toro, C.Morano, J.M.Sauder, S.K.Burley, S.C.Almo, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.49
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 107.672, 107.672, 164.799, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 27.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472 (pdb code 3g8r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472, PDB code: 3g8r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3g8r

Go back to Zinc Binding Sites List in 3g8r
Zinc binding site 1 out of 2 in the Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:88.5
occ:1.00
NE2 A:HIS225 2.4 42.6 1.0
NE2 A:HIS202 2.6 47.5 1.0
CE1 A:HIS225 3.3 42.2 1.0
CD2 A:HIS225 3.5 42.2 1.0
CD2 A:HIS202 3.6 47.6 1.0
CE1 A:HIS202 3.6 47.8 1.0
OE2 A:GLU11 4.0 65.6 1.0
O B:HOH357 4.1 49.4 1.0
OH A:TYR173 4.2 62.1 1.0
CE2 A:TYR173 4.3 62.1 1.0
ND1 A:HIS225 4.5 41.8 1.0
CG A:HIS225 4.6 41.4 1.0
ND1 A:HIS202 4.7 47.5 1.0
CZ A:TYR173 4.8 51.4 1.0
CG A:HIS202 4.8 47.0 1.0
OE1 A:GLU223 4.8 76.3 1.0
CG A:GLU11 5.0 65.4 1.0
CD A:GLU11 5.0 43.5 1.0

Zinc binding site 2 out of 2 in 3g8r

Go back to Zinc Binding Sites List in 3g8r
Zinc binding site 2 out of 2 in the Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:81.3
occ:1.00
NE2 B:HIS225 2.3 35.9 1.0
NE2 B:HIS202 2.5 44.6 1.0
CE1 B:HIS225 2.9 36.4 1.0
CE1 B:HIS202 3.3 44.4 1.0
CD2 B:HIS225 3.6 34.2 1.0
CD2 B:HIS202 3.6 43.6 1.0
O B:HOH470 4.1 54.3 1.0
ND1 B:HIS225 4.2 33.8 1.0
CE2 B:TYR173 4.2 61.6 1.0
O B:HOH355 4.4 17.4 1.0
ND1 B:HIS202 4.5 44.0 1.0
OE2 B:GLU11 4.5 55.4 1.0
CG B:HIS225 4.5 35.7 1.0
CG B:HIS202 4.7 44.0 1.0
OE2 B:GLU223 4.7 73.7 1.0
CG B:GLU11 4.8 54.6 1.0
O B:HOH354 4.8 41.4 1.0
OH B:TYR173 5.0 61.9 1.0

Reference:

V.N.Malashkevich, R.Toro, C.Morano, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Putative Spore Coat Polysaccharide Biosynthesis Protein E From Chromobacterium Violaceum Atcc 12472 To Be Published.
Page generated: Sat Sep 26 10:13:56 2020
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