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Zinc in PDB 3fvp: Thermolysin Inhibition

Enzymatic activity of Thermolysin Inhibition

All present enzymatic activity of Thermolysin Inhibition:
3.4.24.27;

Protein crystallography data

The structure of Thermolysin Inhibition, PDB code: 3fvp was solved by L.Englert, A.Biela, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.41
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.310, 92.310, 129.477, 90.00, 90.00, 120.00
R / Rfree (%) 14.1 / 19.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Thermolysin Inhibition (pdb code 3fvp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thermolysin Inhibition, PDB code: 3fvp:

Zinc binding site 1 out of 1 in 3fvp

Go back to Zinc Binding Sites List in 3fvp
Zinc binding site 1 out of 1 in the Thermolysin Inhibition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thermolysin Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn321

b:9.0
occ:1.00
OE2 A:GLU166 2.0 8.7 1.0
O11 A:UB2323 2.0 8.2 1.0
NE2 A:HIS142 2.0 8.2 1.0
NE2 A:HIS146 2.0 8.1 1.0
CD A:GLU166 2.8 8.9 1.0
CE1 A:HIS146 2.9 7.9 1.0
OE1 A:GLU166 3.0 9.8 1.0
CD2 A:HIS142 3.0 8.7 1.0
P10 A:UB2323 3.0 8.3 1.0
CE1 A:HIS142 3.0 8.6 1.0
O12 A:UB2323 3.1 10.2 1.0
CD2 A:HIS146 3.2 7.9 1.0
OH A:TYR157 3.8 10.2 1.0
NE2 A:HIS231 4.0 8.7 1.0
N13 A:UB2323 4.0 8.8 1.0
C14 A:UB2323 4.0 9.4 1.0
ND1 A:HIS146 4.1 7.6 1.0
CG A:HIS142 4.1 8.6 1.0
ND1 A:HIS142 4.2 8.0 1.0
CG A:HIS146 4.2 8.2 1.0
CG A:GLU166 4.3 7.8 1.0
C9 A:UB2323 4.4 11.0 1.0
C3 A:GOL322 4.5 16.7 1.0
CB A:SER169 4.6 8.6 1.0
CD2 A:HIS231 4.6 9.4 1.0
N8 A:UB2323 4.6 13.6 1.0
C16 A:UB2323 4.6 9.4 1.0
O3 A:GOL322 4.7 10.3 1.0
OG A:SER169 4.8 9.2 1.0
CZ A:TYR157 4.8 11.4 1.0
O26 A:UB2323 4.8 12.1 1.0
CE1 A:TYR157 4.9 9.9 1.0
CA A:GLU166 4.9 7.8 1.0
OE1 A:GLU143 4.9 17.6 1.0
OE2 A:GLU143 5.0 20.6 1.0
CE1 A:HIS231 5.0 9.8 1.0

Reference:

L.Englert, A.Biela, M.Zayed, D.Hangauer, A.Heine, G.Klebe. Thermolysin Inhibition To Be Published.
Page generated: Sat Sep 26 06:34:22 2020
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