The binding sites of Zinc atom in the structure of Crystal Structure of Adenosine Deaminase Mutant (Delta ASP172) From Plasmodium Vivax in Complex With Mt-Coformycin (pdb code 3ewd). This binding sites where shown with 5.0 Angstroms radius around Zinc atom. The 3ewd structure was solved by V.L.SCHRAMM, S.C.ALMO, M.B.CASSERA, M.C.HO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 20.0-1.9 | Space group | P212121 | a (A) | 41.905 | b (A) | 86.975 | c (A) | 106.103 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 90.00 | Rfactor (%) | 20.1 | Rfree (%) | 25 |
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Zinc binding site 1 out of 1 in 3ewd
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 3ewd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His42, A: His44, A: His225, A: His252, A: Asp309, A: Asp310, A: Mcf372, | conact list:
Atom | Atom | Distance (A) | Zn | NE2 A:His42 | 2.13 | Zn | ND1 A:His42 | 4.24 | Zn | CD2 A:His42 | 3.06 | Zn | CE1 A:His42 | 3.16 | Zn | CG A:His42 | 4.23 | Zn | NE2 A:His44 | 2.14 | Zn | ND1 A:His44 | 4.26 | Zn | CD2 A:His44 | 3.03 | Zn | CE1 A:His44 | 3.20 | Zn | CG A:His44 | 4.21 | Zn | NE2 A:His225 | 2.26 | Zn | ND1 A:His225 | 4.36 | Zn | CD2 A:His225 | 3.14 | Zn | CE1 A:His225 | 3.30 | Zn | CG A:His225 | 4.32 | Zn | NE2 A:His252 | 3.85 | Zn | CD2 A:His252 | 4.66 | Zn | CE1 A:His252 | 4.65 | Zn | CB A:Asp309 | 4.60 | Zn | OD2 A:Asp309 | 3.54 | Zn | OD1 A:Asp309 | 2.22 | Zn | CG A:Asp309 | 3.24 | Zn | CA A:Asp309 | 4.86 | Zn | OD2 A:Asp310 | 4.71 | Zn | C9 A:Mcf372 | 3.36 | Zn | N3 A:Mcf372 | 4.90 | Zn | O8 A:Mcf372 | 2.00 | Zn | C8 A:Mcf372 | 3.02 | Zn | C2 A:Mcf372 | 4.78 | Zn | N1 A:Mcf372 | 3.91 | Zn | C5 A:Mcf372 | 4.68 | Zn | N6 A:Mcf372 | 4.34 | Zn | C7 A:Mcf372 | 4.26 | Zn | C10 A:Mcf372 | 4.16 | Zn | N4 A:Mcf372 | 4.61 |
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