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Zinc in PDB 3esr: Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate

Protein crystallography data

The structure of Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate, PDB code: 3esr was solved by S.N.Sugiman-Marangos, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.65 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 64.183, 50.446, 52.018, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 27.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate (pdb code 3esr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate, PDB code: 3esr:

Zinc binding site 1 out of 1 in 3esr

Go back to Zinc Binding Sites List in 3esr
Zinc binding site 1 out of 1 in the Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of D,D-HEPTOSE1.7-Bisphosphate Phosphatase From E. Coli in Complex with Calcium and Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn212

b:33.2
occ:1.00
SG A:CYS112 2.2 24.1 1.0
ND1 A:HIS114 2.3 24.9 1.0
SG A:CYS129 2.3 31.2 1.0
SG A:CYS127 2.5 30.7 1.0
CB A:CYS127 3.2 31.3 1.0
CE1 A:HIS114 3.2 29.6 1.0
CB A:CYS112 3.3 22.0 1.0
CG A:HIS114 3.3 26.2 1.0
CB A:CYS129 3.6 26.2 1.0
CB A:HIS114 3.6 23.2 1.0
N A:ARG130 3.7 24.7 1.0
C A:CYS129 3.9 25.8 1.0
CA A:CYS112 4.0 22.8 1.0
CA A:CYS129 4.0 27.9 1.0
N A:CYS129 4.1 29.1 1.0
N A:HIS114 4.1 24.5 1.0
CB A:ARG130 4.2 23.4 1.0
CA A:ARG130 4.2 23.9 1.0
CD A:PRO113 4.3 24.0 1.0
NE2 A:HIS114 4.4 24.7 1.0
CD2 A:HIS114 4.4 27.0 1.0
CA A:HIS114 4.5 24.5 1.0
C A:CYS112 4.5 22.6 1.0
N A:PRO113 4.5 24.3 1.0
O A:CYS129 4.6 26.5 1.0
CA A:CYS127 4.6 34.8 1.0
O A:HOH321 4.8 32.7 1.0
O A:HOH313 4.8 33.2 1.0
O A:HOH229 4.9 26.7 1.0
C A:CYS127 5.0 35.0 1.0

Reference:

P.Taylor, S.N.Sugiman-Marangos, K.Zhang, G.Deleon, G.D.Wright, M.S.Junop. Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli. To Be Published.
Page generated: Sat Sep 26 06:19:59 2020
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