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Zinc in PDB 3eqo: Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex

Enzymatic activity of Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex

All present enzymatic activity of Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex:
3.2.1.58;

Protein crystallography data

The structure of Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex, PDB code: 3eqo was solved by T.Ishida, S.Fushinobu, R.Kawai, M.Kitaoka, K.Igarashi, M.Samejima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.50 / 2.25
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.534, 67.146, 109.778, 93.94, 106.76, 97.08
R / Rfree (%) 14.2 / 20

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex (pdb code 3eqo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex, PDB code: 3eqo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3eqo

Go back to Zinc Binding Sites List in 3eqo
Zinc binding site 1 out of 2 in the Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn756

b:38.8
occ:1.00
NE2 A:HIS383 2.2 12.3 1.0
O A:HOH1388 2.8 21.0 1.0
CD2 A:HIS383 3.1 13.2 1.0
CE1 A:HIS383 3.3 11.9 1.0
OD2 A:ASP488 3.4 24.4 1.0
O A:PRO384 3.6 20.5 1.0
OG1 A:THR487 3.6 14.9 1.0
CB A:THR487 3.9 15.6 1.0
NH1 A:ARG154 4.1 13.7 1.0
O A:HOH1378 4.2 37.1 1.0
CG A:HIS383 4.3 14.0 1.0
ND1 A:HIS383 4.3 13.5 1.0
CG1 A:VAL449 4.4 15.2 1.0
CG2 A:THR487 4.5 14.6 1.0
C A:PRO384 4.6 19.8 1.0
CG A:ASP488 4.6 21.0 1.0
CA A:GLN385 4.6 19.7 1.0
CG A:GLN385 4.9 22.2 1.0

Zinc binding site 2 out of 2 in 3eqo

Go back to Zinc Binding Sites List in 3eqo
Zinc binding site 2 out of 2 in the Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A) Gluconolactone Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn756

b:39.4
occ:1.00
O B:HOH1346 2.1 22.8 1.0
NE2 B:HIS383 2.2 20.3 1.0
O B:HOH1343 2.8 21.1 1.0
CD2 B:HIS383 3.1 18.7 1.0
CE1 B:HIS383 3.2 16.6 1.0
OD2 B:ASP488 3.3 22.6 1.0
OG1 B:THR487 3.5 18.0 1.0
O B:PRO384 3.7 17.6 1.0
CB B:THR487 3.8 19.2 1.0
O B:HOH1345 3.9 40.6 1.0
NH1 B:ARG154 4.0 25.7 1.0
CG1 B:VAL449 4.3 20.8 1.0
ND1 B:HIS383 4.3 12.4 1.0
CG B:HIS383 4.3 17.1 1.0
CG2 B:THR487 4.4 19.0 1.0
CG B:ASP488 4.5 20.7 1.0
CG B:GLN385 4.7 21.9 1.0
C B:PRO384 4.8 19.4 1.0
CA B:GLN385 4.9 20.9 1.0

Reference:

T.Ishida, S.Fushinobu, R.Kawai, M.Kitaoka, K.Igarashi, M.Samejima. Crystal Structure of Glycoside Hydrolase Family 55 Beta -1,3-Glucanase From the Basidiomycete Phanerochaete Chrysosporium J.Biol.Chem. V. 284 10100 2009.
ISSN: ISSN 0021-9258
PubMed: 19193645
DOI: 10.1074/JBC.M808122200
Page generated: Wed Dec 16 04:16:49 2020

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