Atomistry » Zinc » PDB 3eb6-3ejt » 3eii
Atomistry »
  Zinc »
    PDB 3eb6-3ejt »
      3eii »

Zinc in PDB 3eii: Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris

Protein crystallography data

The structure of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris, PDB code: 3eii was solved by R.Salbo, D.Welner, L.Lo Leggio, P.Harris, K.Mcfarland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.25
Space group F 2 3 1
Cell size a, b, c (Å), α, β, γ (°) 220.918, 220.918, 220.918, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris (pdb code 3eii). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris, PDB code: 3eii:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 1 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:18.4
occ:1.00
NE2 A:HIS68 2.0 15.6 1.0
ND1 A:HIS1 2.1 15.3 1.0
O A:HOH4281 2.1 25.3 1.0
N A:HIS1 2.2 14.6 1.0
O A:HOH4013 2.4 20.1 1.0
CE1 A:HIS68 2.9 16.9 1.0
OH A:TYR153 3.0 9.5 1.0
CG A:HIS1 3.0 17.5 1.0
CD2 A:HIS68 3.1 14.1 1.0
CE1 A:HIS1 3.1 16.2 1.0
CA A:HIS1 3.1 15.6 1.0
CB A:HIS1 3.3 15.8 1.0
OH A:TYR67 3.8 19.5 1.0
CZ A:TYR153 4.0 10.2 1.0
ND1 A:HIS68 4.1 15.3 1.0
CD2 A:HIS1 4.2 16.8 1.0
CG A:HIS68 4.2 15.8 1.0
NE2 A:HIS1 4.2 19.3 1.0
OE1 A:GLN151 4.2 13.2 1.0
O3 A:SO44851 4.2 53.5 1.0
O A:HOH4385 4.3 22.0 1.0
CZ A:TYR67 4.3 17.2 1.0
CE1 A:TYR67 4.4 16.1 1.0
C A:HIS1 4.5 16.5 1.0
CE1 A:TYR153 4.6 9.1 1.0
CE2 A:TYR153 4.9 9.1 1.0

Zinc binding site 2 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 2 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:26.5
occ:1.00
ND1 B:HIS1 2.1 21.2 1.0
NE2 B:HIS68 2.2 16.8 1.0
N B:HIS1 2.4 19.6 1.0
O B:HOH4160 2.4 38.5 1.0
O B:HOH4016 2.4 26.3 1.0
OH B:TYR153 2.9 11.6 1.0
CG B:HIS1 3.0 19.1 1.0
CE1 B:HIS1 3.1 20.8 1.0
CE1 B:HIS68 3.1 16.9 1.0
CA B:HIS1 3.1 18.9 1.0
CD2 B:HIS68 3.2 15.4 1.0
CB B:HIS1 3.3 17.6 1.0
OH B:TYR67 3.9 20.2 1.0
CZ B:TYR153 4.0 12.6 1.0
O B:HOH4625 4.1 50.3 1.0
OE1 B:GLN151 4.1 15.2 1.0
CD2 B:HIS1 4.2 19.1 1.0
NE2 B:HIS1 4.2 18.7 1.0
ND1 B:HIS68 4.3 16.5 1.0
CG B:HIS68 4.4 16.5 1.0
CZ B:TYR67 4.5 17.8 1.0
CE1 B:TYR153 4.5 11.2 1.0
C B:HIS1 4.6 20.4 1.0
CE1 B:TYR67 4.6 17.2 1.0
CE2 B:TYR153 4.9 11.6 1.0

Zinc binding site 3 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 3 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn352

b:61.3
occ:1.00
O B:HOH4690 2.3 41.2 1.0
O B:HOH4601 3.4 39.2 1.0
OE1 B:GLN199 3.7 29.6 1.0
O A:TYR27 3.8 12.5 1.0
O B:HOH4478 4.0 26.2 1.0
OG B:SER197 4.0 23.6 1.0
OE1 A:GLN35 4.1 15.9 1.0
O B:HOH4648 4.1 35.0 1.0
O A:HOH4045 4.6 27.9 1.0
CB B:SER197 4.7 21.2 1.0
CD B:GLN199 4.7 28.6 1.0
O A:HOH4353 4.7 42.2 1.0
O A:HOH4094 4.8 23.9 1.0
NE2 A:GLN35 4.8 13.0 1.0
CD A:GLN35 4.9 13.2 1.0
CB B:GLN199 4.9 21.6 1.0
CG B:GLN199 4.9 26.3 1.0
C A:TYR27 5.0 12.2 1.0

Zinc binding site 4 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 4 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:20.5
occ:1.00
NE2 C:HIS68 2.0 14.5 1.0
ND1 C:HIS1 2.2 13.5 1.0
N C:HIS1 2.2 16.7 1.0
O1 C:GOL2647 2.7 46.4 1.0
O C:HOH4464 2.8 22.9 1.0
OH C:TYR153 2.9 9.9 1.0
CE1 C:HIS68 3.0 13.9 1.0
CD2 C:HIS68 3.1 14.2 1.0
CG C:HIS1 3.1 14.4 1.0
CA C:HIS1 3.1 16.3 1.0
CE1 C:HIS1 3.2 14.8 1.0
CB C:HIS1 3.3 14.0 1.0
OH C:TYR67 3.8 18.9 1.0
C1 C:GOL2647 3.8 46.2 1.0
CZ C:TYR153 3.9 11.7 1.0
ND1 C:HIS68 4.1 14.6 1.0
OE1 C:GLN151 4.1 13.3 1.0
CG C:HIS68 4.2 15.1 1.0
CD2 C:HIS1 4.3 13.9 1.0
NE2 C:HIS1 4.3 17.4 1.0
CZ C:TYR67 4.4 16.9 1.0
CE1 C:TYR67 4.5 16.0 1.0
CE1 C:TYR153 4.5 10.8 1.0
C C:HIS1 4.5 16.3 1.0
CE2 C:TYR153 4.8 9.7 1.0

Zinc binding site 5 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 5 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn351

b:55.0
occ:1.00
OE2 C:GLU100 2.5 21.2 1.0
O C:HOH4431 3.0 25.9 1.0
O C:HOH4687 3.1 51.8 1.0
CD C:GLU100 3.2 21.8 1.0
OE1 C:GLU100 3.3 22.8 1.0
O C:HOH4044 4.0 13.5 1.0
NE2 C:HIS102 4.2 22.7 1.0
CG C:GLU100 4.7 21.8 1.0
CB C:ASN200 4.7 16.1 1.0
OD1 C:ASN200 4.7 18.8 1.0
CG C:ASN200 4.9 16.5 1.0
CA C:ALA204 4.9 16.0 1.0
CD2 C:HIS102 5.0 23.8 1.0

Zinc binding site 6 out of 6 in 3eii

Go back to Zinc Binding Sites List in 3eii
Zinc binding site 6 out of 6 in the Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Zinc-Bound Glycoside Hydrolase 61 E From Thielavia Terrestris within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:27.1
occ:1.00
ND1 D:HIS1 2.0 18.6 1.0
NE2 D:HIS68 2.1 13.7 1.0
N D:HIS1 2.3 16.3 1.0
O1 D:GOL2647 2.4 42.1 1.0
OH D:TYR153 2.8 10.8 1.0
CG D:HIS1 3.0 17.6 1.0
CE1 D:HIS1 3.1 16.9 1.0
CE1 D:HIS68 3.1 15.0 1.0
CA D:HIS1 3.1 16.3 1.0
CD2 D:HIS68 3.2 15.3 1.0
CB D:HIS1 3.3 15.2 1.0
C1 D:GOL2647 3.8 42.6 1.0
OH D:TYR67 3.8 18.3 1.0
CZ D:TYR153 3.9 11.9 1.0
OE1 D:GLN151 4.1 15.4 1.0
NE2 D:HIS1 4.2 17.7 1.0
CD2 D:HIS1 4.2 17.5 1.0
O2 D:GOL2647 4.2 44.5 1.0
ND1 D:HIS68 4.2 16.9 1.0
C2 D:GOL2647 4.3 42.5 1.0
CG D:HIS68 4.3 15.9 1.0
CE1 D:TYR153 4.4 11.3 1.0
CZ D:TYR67 4.5 16.4 1.0
C D:HIS1 4.5 16.6 1.0
CE1 D:TYR67 4.6 16.7 1.0
CE2 D:TYR153 4.8 9.8 1.0

Reference:

P.V.Harris, D.Welner, K.C.Mcfarland, E.Re, J.C.Navarro Poulsen, K.Brown, R.Salbo, H.Ding, E.Vlasenko, S.Merino, F.Xu, J.Cherry, S.Larsen, L.Lo Leggio. Stimulation of Lignocellulosic Biomass Hydrolysis By Proteins of Glycoside Hydrolase Family 61: Structure and Function of A Large, Enigmatic Family. Biochemistry V. 49 3305 2010.
ISSN: ISSN 0006-2960
PubMed: 20230050
DOI: 10.1021/BI100009P
Page generated: Wed Dec 16 04:16:16 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy