Zinc in PDB 3dco: Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule

The structure of Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule (pdb code 3dco). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule, PDB code: 3dco:

Zinc binding site 1 out of 1 in the Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into the 11- Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn900 b:2.0 occ:1.00 CA A:HIS283 3.5 75.1 1.0 O A:HIS283 3.5 77.0 1.0 C A:HIS283 3.6 74.5 1.0 O A:TYR282 3.7 79.3 1.0 CB A:GLN285 4.2 42.4 1.0 N A:GLN285 4.3 45.6 1.0 N A:HIS283 4.3 76.5 1.0 C A:TYR282 4.3 78.4 1.0 N A:GLU284 4.3 67.2 1.0 CG A:GLN285 4.5 47.6 1.0 CB A:HIS283 4.7 75.8 1.0 CG A:HIS283 4.7 74.6 1.0 OE1 A:GLU284 4.8 68.1 1.0 ND1 A:HIS283 4.8 75.5 1.0 CA A:GLN285 4.8 39.3 1.0

J.C.Cochran, C.V.Sindelar, N.K.Mulko, K.A.Collins, S.E.Kong, R.S.Hawley, F.J.Kull. Atpase Cycle of the Nonmotile Kinesin Nod Allows Microtubule End Tracking and Drives Chromosome Movement. Cell(Cambridge,Mass.) V. 136 110 2009.
ISSN: ISSN 0092-8674
PubMed: 19135893
DOI: 10.1016/J.CELL.2008.11.048