Zinc in PDB 3czx: The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis

The structure of The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis, PDB code: 3czx was solved by R.Zhang, M.Zhou, M.Bargassa, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.74 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.955, 65.039, 79.319, 90.00, 109.53, 90.00
R / Rfree (%)	18 / 21.8

The binding sites of Zinc atom in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis (pdb code 3czx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis, PDB code: 3czx:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:27.4 occ:1.00 OE2 A:GLU25 2.1 14.0 1.0 NE2 A:HIS11 2.2 19.7 1.0 ND1 A:HIS77 2.2 16.8 1.0 O A:HOH337 2.2 20.6 1.0 O A:HOH353 2.3 25.1 1.0 CD A:GLU25 3.0 14.6 1.0 CE1 A:HIS77 3.0 18.1 1.0 CD2 A:HIS11 3.1 18.5 1.0 CE1 A:HIS11 3.2 21.7 1.0 OE1 A:GLU25 3.2 14.7 1.0 CG A:HIS77 3.3 13.8 1.0 CB A:HIS77 3.7 11.6 1.0 NE2 A:HIS130 3.9 21.3 1.0 CE1 A:HIS130 4.1 21.9 1.0 O A:THR78 4.1 15.8 1.0 NE2 A:HIS77 4.2 15.0 1.0 CG A:GLU25 4.3 10.1 1.0 CG A:HIS11 4.3 20.2 1.0 ND1 A:HIS11 4.3 23.4 1.0 CD2 A:HIS77 4.4 14.6 1.0 CA A:HIS77 4.5 10.6 1.0 OG A:SER131 4.6 29.1 1.0 N A:THR78 4.6 10.4 1.0

Zinc binding site 2 out of 4 in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:18.3 occ:1.00 OE2 B:GLU25 2.1 9.4 1.0 NE2 B:HIS11 2.2 11.6 1.0 O B:HOH685 2.2 22.3 1.0 ND1 B:HIS77 2.3 9.3 1.0 O B:HOH496 2.3 20.5 1.0 CD B:GLU25 2.9 7.9 1.0 CD2 B:HIS11 3.2 11.9 1.0 CE1 B:HIS77 3.2 11.4 1.0 CE1 B:HIS11 3.2 12.1 1.0 OE1 B:GLU25 3.2 12.4 1.0 CG B:HIS77 3.4 9.1 1.0 CB B:HIS77 3.7 10.0 1.0 NE2 B:HIS130 3.9 18.4 1.0 CE1 B:HIS130 4.0 16.2 1.0 O B:THR78 4.2 13.5 1.0 CG B:GLU25 4.2 7.4 1.0 ND1 B:HIS11 4.3 11.5 1.0 CG B:HIS11 4.3 8.8 1.0 NE2 B:HIS77 4.4 9.4 1.0 O B:HOH574 4.4 28.3 1.0 CD2 B:HIS77 4.4 8.3 1.0 CA B:HIS77 4.5 8.4 1.0 OG B:SER131 4.5 19.1 1.0 N B:THR78 4.6 9.1 1.0

Zinc binding site 3 out of 4 in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn301 b:19.8 occ:1.00 O C:HOH390 2.1 21.2 1.0 OE2 C:GLU25 2.2 11.6 1.0 NE2 C:HIS11 2.2 12.9 1.0 ND1 C:HIS77 2.2 11.5 1.0 CD C:GLU25 3.0 10.8 1.0 CD2 C:HIS11 3.1 12.6 1.0 CE1 C:HIS77 3.2 10.5 1.0 CE1 C:HIS11 3.2 14.7 1.0 CG C:HIS77 3.3 9.6 1.0 OE1 C:GLU25 3.3 13.6 1.0 CB C:HIS77 3.6 11.1 1.0 O C:HOH361 3.6 32.0 1.0 NE2 C:HIS130 4.0 19.9 1.0 CE1 C:HIS130 4.0 19.9 1.0 O C:THR78 4.2 14.6 1.0 O C:HOH512 4.3 29.4 1.0 NE2 C:HIS77 4.3 9.5 1.0 CG C:HIS11 4.3 10.5 1.0 ND1 C:HIS11 4.3 14.2 1.0 CG C:GLU25 4.3 8.9 1.0 CD2 C:HIS77 4.4 10.4 1.0 OG C:SER131 4.4 21.1 1.0 CA C:HIS77 4.5 9.8 1.0 N C:THR78 4.6 10.5 1.0 OE1 C:GLU144 4.9 25.5 1.0

Zinc binding site 4 out of 4 in the The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of the Putative N-Acetylmuramoyl-L- Alanine Amidase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn301 b:30.0 occ:1.00 OE2 D:GLU25 2.2 12.9 1.0 NE2 D:HIS11 2.2 20.4 1.0 ND1 D:HIS77 2.3 15.3 1.0 O D:HOH627 2.4 27.5 1.0 CD D:GLU25 2.9 16.0 1.0 CD2 D:HIS11 3.0 18.9 1.0 CE1 D:HIS77 3.1 16.1 1.0 OE1 D:GLU25 3.2 13.2 1.0 CE1 D:HIS11 3.3 21.1 1.0 CG D:HIS77 3.4 14.7 1.0 CB D:HIS77 3.8 12.3 1.0 NE2 D:HIS130 3.8 32.1 1.0 CE1 D:HIS130 4.1 32.7 1.0 CG D:HIS11 4.2 18.9 1.0 O D:THR78 4.2 16.2 1.0 CG D:GLU25 4.2 13.5 1.0 O D:HOH632 4.3 26.9 1.0 NE2 D:HIS77 4.3 16.1 1.0 ND1 D:HIS11 4.3 19.3 1.0 OG D:SER131 4.4 32.7 1.0 CD2 D:HIS77 4.5 11.7 1.0 CA D:HIS77 4.6 12.5 1.0 N D:THR78 4.8 13.0 1.0 CD2 D:HIS130 4.9 32.1 1.0

R.Zhang, M.Zhou, M.Bargassa, A.Joachimiak. The Crystal Structure of the Putative N-Acetylmuramoyl-L-Alanine Amidase From Neisseria Meningitidis. To Be Published.