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Zinc in PDB 3ce1: Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6

Enzymatic activity of Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6

All present enzymatic activity of Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6, PDB code: 3ce1 was solved by A.H.Teh, S.Kanamasa, S.Kajiwara, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 35.854, 111.768, 70.456, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 16.6

Other elements in 3ce1:

The structure of Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6 also contains other interesting chemical elements:

Copper (Cu) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6 (pdb code 3ce1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6, PDB code: 3ce1:

Zinc binding site 1 out of 1 in 3ce1

Go back to Zinc Binding Sites List in 3ce1
Zinc binding site 1 out of 1 in the Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:5.6
occ:1.00
 OD1 A:ASP87 2.0 5.8 1.0
ND1 A:HIS67 2.0 6.3 1.0
ND1 A:HIS84 2.0 6.0 1.0
ND1 A:HIS75 2.1 5.7 1.0
CG A:ASP87 2.7 5.4 1.0
OD2 A:ASP87 2.8 5.5 1.0
CE1 A:HIS84 2.9 6.6 1.0
CE1 A:HIS75 2.9 5.5 1.0
CE1 A:HIS67 3.0 8.9 1.0
CG A:HIS67 3.1 7.5 1.0
CG A:HIS84 3.1 5.9 1.0
CG A:HIS75 3.2 5.3 1.0
CB A:HIS67 3.5 7.4 1.0
CB A:HIS84 3.6 5.9 1.0
CB A:HIS75 3.6 5.8 1.0
CA A:HIS75 3.9 5.3 1.0
O A:LYS140 3.9 12.5 1.0
NE2 A:HIS84 4.1 7.2 1.0
NE2 A:HIS67 4.1 12.0 1.0
NE2 A:HIS75 4.1 5.8 1.0
CB A:ASP87 4.2 5.7 1.0
CD2 A:HIS67 4.2 10.6 1.0
CD2 A:HIS84 4.2 7.3 1.0
CD2 A:HIS75 4.2 6.0 1.0
N A:HIS84 4.7 6.1 1.0
CA A:ASP87 4.7 5.8 1.0
CA A:THR141 4.7 12.7 1.0
N A:GLY76 4.7 5.6 1.0
CA A:HIS84 4.7 5.9 1.0
C A:LYS140 4.8 11.6 1.0
N A:HIS75 4.8 5.5 1.0
C A:HIS75 4.8 5.4 1.0
N A:ASP87 4.9 5.3 1.0
CD2 A:HIS50 5.0 9.8 1.0
CA A:HIS67 5.0 6.5 1.0

Reference:

A.H.Teh, S.Kanamasa, S.Kajiwara, T.Kumasaka. Structure of Cu/Zn Superoxide Dismutase From the Heavy-Metal-Tolerant Yeast Cryptococcus Liquefaciens Strain N6. Biochem.Biophys.Res.Commun. V. 374 475 2008.
ISSN: ISSN 0006-291X
PubMed: 18640099
DOI: 10.1016/J.BBRC.2008.07.046
Page generated: Thu Oct 24 11:46:23 2024

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