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Zinc in PDB 3c9l: Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form

Protein crystallography data

The structure of Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form, PDB code: 3c9l was solved by R.E.Stenkamp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.96 / 2.65
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 103.820, 103.820, 76.590, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form (pdb code 3c9l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form, PDB code: 3c9l:

Zinc binding site 1 out of 1 in 3c9l

Go back to Zinc Binding Sites List in 3c9l
Zinc binding site 1 out of 1 in the Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1349

b:95.2
occ:0.54
ND2 A:ASN151 2.7 97.2 1.0
N A:GLY149 3.2 0.2 1.0
ND1 A:HIS152 3.2 98.4 1.0
CA A:GLY149 3.3 92.9 1.0
O A:ARG147 3.3 0.3 1.0
CB A:ASN151 3.5 87.9 1.0
CG A:ASN151 3.6 96.3 1.0
C A:GLY149 3.6 88.0 1.0
N A:ASN151 3.7 84.5 1.0
CE1 A:HIS152 3.8 97.8 1.0
N A:GLU150 4.0 89.9 1.0
N A:HIS152 4.1 76.5 1.0
CG A:ARG147 4.1 0.1 1.0
O A:GLY149 4.1 84.3 1.0
CA A:ASN151 4.1 86.1 1.0
CD A:ARG147 4.2 0.7 1.0
C A:ARG147 4.3 0.1 1.0
CG A:HIS152 4.4 90.1 1.0
C A:PHE148 4.4 98.6 1.0
NE A:ARG147 4.5 0.7 1.0
C A:ASN151 4.6 78.9 1.0
C A:GLU150 4.7 82.9 1.0
OD1 A:ASN151 4.8 98.5 1.0
CB A:ARG147 4.8 0.6 1.0
CB A:HIS152 4.8 80.8 1.0
CA A:GLU150 4.9 87.3 1.0
CA A:PHE148 4.9 0.1 1.0

Reference:

R.E.Stenkamp, R.E.Stenkamp. N/A N/A.
ISSN: ISSN 0907-4449
PubMed: 18645239
DOI: 10.1107/S0907444908017162
Page generated: Wed Dec 16 04:10:22 2020

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