Atomistry » Zinc » PDB 3c3u-3cia » 3c62
Atomistry »
  Zinc »
    PDB 3c3u-3cia »
      3c62 »

Zinc in PDB 3c62: Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination

Protein crystallography data

The structure of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination, PDB code: 3c62 was solved by F.A.Tezcan, E.N.Salgado, R.A.Lewis, J.Faraone-Mennella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.23 / 1.87
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.968, 90.133, 49.357, 90.00, 109.64, 90.00
R / Rfree (%) 23.1 / 27.3

Other elements in 3c62:

The structure of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination (pdb code 3c62). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination, PDB code: 3c62:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3c62

Go back to Zinc Binding Sites List in 3c62
Zinc binding site 1 out of 4 in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn107

b:7.5
occ:1.00
NE2 B:HIS63 2.0 2.7 1.0
NE2 A:HIS77 2.0 3.7 1.0
NE2 A:HIS73 2.0 2.1 1.0
NE2 D:HIS59 2.2 4.6 1.0
CE1 A:HIS73 3.0 5.6 1.0
CD2 B:HIS63 3.0 2.0 1.0
CD2 A:HIS77 3.0 4.3 1.0
CE1 B:HIS63 3.0 3.7 1.0
CD2 A:HIS73 3.0 4.0 1.0
CE1 A:HIS77 3.1 6.2 1.0
CD2 D:HIS59 3.1 5.3 1.0
CE1 D:HIS59 3.2 5.6 1.0
ND1 A:HIS73 4.0 5.5 1.0
ND1 B:HIS63 4.1 4.0 1.0
CG A:HIS73 4.1 4.6 1.0
CG B:HIS63 4.1 4.8 1.0
CG A:HIS77 4.2 4.7 1.0
ND1 A:HIS77 4.2 4.4 1.0
O B:HOH416 4.2 23.0 1.0
ND1 D:HIS59 4.3 5.2 1.0
CG D:HIS59 4.3 6.5 1.0
O C:HOH288 4.3 4.5 1.0
O A:HOH229 4.3 3.3 1.0
O D:HOH208 4.5 2.6 1.0
O C:HOH313 4.8 20.8 1.0
CD1 B:ILE67 4.8 10.5 1.0
O B:HOH360 4.8 26.7 1.0

Zinc binding site 2 out of 4 in 3c62

Go back to Zinc Binding Sites List in 3c62
Zinc binding site 2 out of 4 in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn107

b:8.6
occ:1.00
NE2 B:HIS77 2.0 2.0 1.0
NE2 C:HIS59 2.0 9.4 1.0
NE2 A:HIS63 2.0 4.5 1.0
NE2 B:HIS73 2.1 8.7 1.0
CE1 B:HIS77 2.9 6.1 1.0
CD2 A:HIS63 2.9 4.7 1.0
CE1 C:HIS59 2.9 11.7 1.0
CE1 B:HIS73 3.0 9.4 1.0
CD2 B:HIS77 3.0 2.1 1.0
CE1 A:HIS63 3.1 6.7 1.0
CD2 C:HIS59 3.1 12.0 1.0
CD2 B:HIS73 3.1 9.1 1.0
O A:HOH244 3.7 25.0 1.0
ND1 B:HIS77 4.0 3.5 1.0
ND1 C:HIS59 4.1 9.4 1.0
CG A:HIS63 4.1 6.4 1.0
CG B:HIS77 4.1 3.5 1.0
ND1 B:HIS73 4.1 9.3 1.0
ND1 A:HIS63 4.2 5.0 1.0
CG C:HIS59 4.2 11.7 1.0
CG B:HIS73 4.2 7.9 1.0
O B:HOH309 4.2 3.9 1.0
O C:HOH270 4.3 7.6 1.0
CD1 A:ILE67 4.5 5.5 1.0

Zinc binding site 3 out of 4 in 3c62

Go back to Zinc Binding Sites List in 3c62
Zinc binding site 3 out of 4 in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn107

b:7.9
occ:1.00
NE2 C:HIS73 2.1 5.8 1.0
NE2 C:HIS77 2.1 10.2 1.0
NE2 D:HIS63 2.1 4.3 1.0
NE2 B:HIS59 2.1 2.0 1.0
CE1 C:HIS77 2.8 10.8 1.0
CE1 C:HIS73 3.0 7.7 1.0
CD2 D:HIS63 3.0 2.0 1.0
CD2 C:HIS73 3.1 5.8 1.0
CD2 B:HIS59 3.1 5.6 1.0
CE1 D:HIS63 3.1 4.1 1.0
CE1 B:HIS59 3.1 5.3 1.0
CD2 C:HIS77 3.2 9.7 1.0
ND1 C:HIS77 4.0 11.4 1.0
ND1 C:HIS73 4.1 6.4 1.0
O C:HOH239 4.1 18.6 1.0
CG D:HIS63 4.1 2.9 1.0
ND1 D:HIS63 4.1 2.0 1.0
CG C:HIS73 4.1 5.9 1.0
ND1 B:HIS59 4.2 4.9 1.0
CG B:HIS59 4.2 5.4 1.0
CG C:HIS77 4.2 8.8 1.0
O B:HOH343 4.5 7.3 1.0
CD1 D:ILE67 4.6 7.5 1.0
O C:HOH285 4.6 8.5 1.0
O D:HOH175 4.7 29.6 1.0

Zinc binding site 4 out of 4 in 3c62

Go back to Zinc Binding Sites List in 3c62
Zinc binding site 4 out of 4 in the Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn107

b:8.6
occ:1.00
NE2 C:HIS63 1.9 7.0 1.0
NE2 D:HIS77 2.1 5.1 1.0
NE2 D:HIS73 2.1 4.3 1.0
NE2 A:HIS59 2.1 4.8 1.0
CE1 A:HIS59 2.8 6.0 1.0
CD2 C:HIS63 2.9 6.1 1.0
CE1 C:HIS63 3.0 6.2 1.0
CD2 D:HIS73 3.0 5.1 1.0
CE1 D:HIS77 3.0 6.3 1.0
CD2 D:HIS77 3.1 5.9 1.0
CE1 D:HIS73 3.1 5.0 1.0
CD2 A:HIS59 3.3 5.8 1.0
ND1 A:HIS59 4.0 5.8 1.0
ND1 C:HIS63 4.0 2.8 1.0
CG C:HIS63 4.0 6.4 1.0
O C:HOH284 4.1 9.4 1.0
ND1 D:HIS77 4.1 4.2 1.0
ND1 D:HIS73 4.2 5.3 1.0
CG D:HIS73 4.2 5.2 1.0
CG D:HIS77 4.2 5.2 1.0
CG A:HIS59 4.3 5.6 1.0
O D:HOH231 4.5 2.0 1.0
O A:HOH201 4.7 2.0 1.0
CD1 C:ILE67 4.8 8.2 1.0
O C:HOH258 5.0 10.8 1.0

Reference:

E.N.Salgado, R.A.Lewis, J.Faraone-Mennella, F.A.Tezcan. Metal-Mediated Self-Assembly of Protein Superstructures: Influence of Secondary Interactions on Protein Oligomerization and Aggregation. J.Am.Chem.Soc. V. 130 6082 2008.
ISSN: ISSN 0002-7863
PubMed: 18422313
DOI: 10.1021/JA8012177
Page generated: Wed Dec 16 04:10:12 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy