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Zinc in PDB 3c04: Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa

Enzymatic activity of Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa

All present enzymatic activity of Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa:
5.4.2.2; 5.4.2.8;

Protein crystallography data

The structure of Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa, PDB code: 3c04 was solved by R.Mehra-Chaudhary, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.597, 72.251, 92.784, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa (pdb code 3c04). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa, PDB code: 3c04:

Zinc binding site 1 out of 1 in 3c04

Go back to Zinc Binding Sites List in 3c04
Zinc binding site 1 out of 1 in the Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:34.9
occ:1.00
OD2 A:ASP242 2.0 27.6 1.0
OD2 A:ASP244 2.0 30.9 1.0
OD1 A:ASP246 2.0 31.3 1.0
O3P A:SEP108 2.0 45.6 1.0
OG A:SEP108 2.8 46.6 1.0
CG A:ASP242 2.9 29.0 1.0
CG A:ASP246 3.0 31.3 1.0
CG A:ASP244 3.0 30.8 1.0
P A:SEP108 3.0 46.4 1.0
OD1 A:ASP242 3.2 32.0 1.0
OD2 A:ASP246 3.3 32.5 1.0
OD1 A:ASP244 3.4 31.0 1.0
NZ A:LYS118 3.8 31.5 1.0
CB A:SEP108 4.0 43.1 1.0
O1P A:SEP108 4.1 47.5 1.0
NE A:ARG247 4.2 45.7 1.0
N A:ASP246 4.2 29.9 1.0
O2P A:SEP108 4.2 47.3 1.0
CB A:ASP242 4.3 28.4 1.0
CB A:ASP246 4.3 30.6 1.0
CB A:ASP244 4.3 30.0 1.0
N A:ASP244 4.4 29.1 1.0
CA A:SEP108 4.4 43.2 1.0
CB A:ARG247 4.5 34.0 1.0
NE2 A:HIS329 4.5 35.2 1.0
N A:ARG247 4.6 32.3 1.0
CD A:ARG247 4.6 42.3 1.0
CA A:ASP246 4.6 31.2 1.0
N A:GLY245 4.6 29.1 1.0
CA A:ASP244 4.7 29.7 1.0
C A:ASP246 4.7 31.3 1.0
C A:SEP108 4.8 43.0 1.0
C A:ASP244 4.8 29.6 1.0
CE1 A:HIS329 4.9 35.2 1.0

Reference:

A.M.Schramm, R.Mehra-Chaudhary, C.M.Furdui, L.J.Beamer. Backbone Flexibility, Conformational Change, and Catalysis in A Phosphohexomutase From Pseudomonas Aeruginosa. Biochemistry V. 47 9154 2008.
ISSN: ISSN 0006-2960
PubMed: 18690721
DOI: 10.1021/BI8005219
Page generated: Wed Dec 16 04:09:55 2020

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