Zinc in PDB 3byr: Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)

The structure of Mode of Action of A Putative Zinc Transporter Czrb (Zn Form), PDB code: 3byr was solved by V.Cherezov, V.Srinivasan, D.M.E.Szebenyi, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.43 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	50.750, 74.560, 43.940, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 25

The binding sites of Zinc atom in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form) (pdb code 3byr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form), PDB code: 3byr:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mode of Action of A Putative Zinc Transporter Czrb (Zn Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:17.5 occ:1.00 OE2 A:GLU84 1.9 11.8 1.0 O A:HOH517 2.0 13.3 1.0 ND1 A:HIS47 2.0 4.7 1.0 NE2 A:HIS31 2.1 3.4 1.0 CD A:GLU84 2.7 11.2 1.0 OE1 A:GLU84 2.8 11.7 1.0 CE1 A:HIS47 2.9 6.6 1.0 CD2 A:HIS31 3.0 2.1 1.0 CG A:HIS47 3.1 5.0 1.0 CE1 A:HIS31 3.1 4.0 1.0 CB A:HIS47 3.4 4.8 1.0 NE2 A:HIS47 4.1 6.9 1.0 CG A:GLU84 4.1 10.4 1.0 O A:HOH600 4.2 12.5 1.0 CD2 A:HIS47 4.2 6.5 1.0 CG A:HIS31 4.2 3.1 1.0 ND1 A:HIS31 4.2 4.3 1.0 OE1 A:GLU88 4.3 15.8 1.0 O A:GLU88 4.3 14.1 1.0 CB A:GLU88 4.3 13.7 1.0 O A:HOH589 4.7 18.1 1.0 CB A:GLU84 4.8 10.8 1.0 CG A:GLU88 4.9 14.3 1.0 CA A:HIS47 4.9 5.1 1.0 ZN A:ZN502 4.9 18.5 1.0

Zinc binding site 2 out of 4 in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mode of Action of A Putative Zinc Transporter Czrb (Zn Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:18.5 occ:1.00 NE2 A:HIS82 2.1 8.4 1.0 OE1 A:GLU84 2.3 11.7 1.0 O A:HOH589 2.5 18.1 1.0 CD2 A:HIS82 3.1 7.0 1.0 CE1 A:HIS82 3.1 7.9 1.0 CD A:GLU84 3.2 11.2 1.0 CG A:GLU84 3.4 10.4 1.0 O A:HOH600 4.2 12.5 1.0 ND1 A:HIS82 4.2 7.7 1.0 CG A:HIS82 4.3 9.0 1.0 OE2 A:GLU84 4.4 11.8 1.0 OE1 A:GLU88 4.6 15.8 1.0 O A:HOH553 4.6 25.2 1.0 CB A:GLU84 4.6 10.8 1.0 CD A:GLU88 4.7 15.2 1.0 CG A:GLU88 4.8 14.3 1.0 CE1 A:HIS47 4.8 6.6 1.0 ND1 A:HIS47 4.9 4.7 1.0 ZN A:ZN501 4.9 17.5 1.0 O A:HOH517 5.0 13.3 1.0

Zinc binding site 3 out of 4 in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Mode of Action of A Putative Zinc Transporter Czrb (Zn Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:79.8 occ:1.00 OD2 A:ASP32 2.0 7.2 1.0 NE2 A:HIS47 2.4 6.9 1.0 O A:HOH516 2.5 13.7 1.0 CG A:ASP32 3.1 6.6 1.0 CE1 A:HIS47 3.2 6.6 1.0 CD2 A:HIS47 3.2 6.5 1.0 CB A:ASP32 3.7 4.7 1.0 OE2 A:GLU45 3.7 14.8 1.0 O A:HOH553 3.8 25.2 1.0 OD1 A:ASP32 4.1 8.4 1.0 O A:ASP32 4.1 5.6 1.0 ND1 A:HIS47 4.2 4.7 1.0 CG A:HIS47 4.2 5.0 1.0 CD A:LYS34 4.6 9.2 1.0 CD A:GLU45 4.8 13.4 1.0 O A:HOH573 4.9 37.6 1.0 CA A:ASP32 4.9 5.0 1.0 C A:ASP32 5.0 4.7 1.0

Zinc binding site 4 out of 4 in the Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Mode of Action of A Putative Zinc Transporter Czrb (Zn Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn504 b:34.3 occ:0.50 O A:HOH528 1.9 10.1 1.0 O A:HOH586 2.7 24.3 1.0 O A:HOH571 4.0 26.5 1.0 CA A:GLY52 4.6 11.3 1.0 N A:GLY52 4.8 11.1 1.0 CB A:GLU86 4.9 11.1 1.0

V.Cherezov, N.Hofer, D.M.Szebenyi, O.Kolaj, J.G.Wall, R.Gillilan, V.Srinivasan, C.P.Jaroniec, M.Caffrey. Insights Into the Mode of Action of A Putative Zinc Transporter Czrb in Thermus Thermophilus Structure V. 16 1378 2008.
ISSN: ISSN 0969-2126
PubMed: 18786400
DOI: 10.1016/J.STR.2008.05.014