Zinc in PDB 3bpu: Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant

The structure of Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant, PDB code: 3bpu was solved by E.S.Pilka, V.Hozjan, C.Cooper, A.C.W.Pike, J.Elkins, D.A.Doyle, F.Vondelft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, U.Oppermann, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.74 / 1.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	32.472, 61.578, 80.113, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 25.1

The binding sites of Zinc atom in the Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant (pdb code 3bpu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant, PDB code: 3bpu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:22.6 occ:1.00 NE2 A:HIS699 2.1 12.5 1.0 CD2 A:HIS699 3.1 14.4 1.0 CE1 A:HIS699 3.1 10.5 1.0 O A:HOH79 3.8 39.6 1.0 CG2 A:VAL703 4.0 13.0 1.0 ND1 A:HIS699 4.2 12.9 1.0 CG A:HIS699 4.3 12.6 1.0 O A:HOH20 4.5 42.8 1.0 O A:HOH78 4.7 49.2 1.0 CG1 A:VAL703 4.9 12.3 1.0 CB A:VAL703 4.9 11.8 1.0 O A:HOH89 5.0 50.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn902 b:26.2 occ:0.50 ND1 A:HIS645 2.0 20.8 1.0 OE2 A:GLU714 2.2 16.1 1.0 OE1 A:GLU714 2.6 25.9 1.0 CD A:GLU714 2.6 8.1 1.0 CE1 A:HIS645 2.9 11.1 1.0 CG A:HIS645 3.0 26.9 1.0 CB A:HIS645 3.3 16.7 1.0 NE2 A:HIS645 4.0 21.0 1.0 CG A:GLU714 4.0 20.1 1.0 CD2 A:HIS645 4.1 27.4 1.0 CA A:HIS645 4.7 17.4 1.0 CB A:GLU714 4.9 20.5 1.0

E.S.Pilka, V.Hozjan, C.Cooper, A.C.W.Pike, J.Elkins, D.A.Doyle, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, U.Oppermann. Crystal Structure of the 3RD Pdz Domain of Human Membrane Associated Guanylate Kinase, C677S and C709S Double Mutant. To Be Published.