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Zinc in PDB 3b0z: Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium

Protein crystallography data

The structure of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium, PDB code: 3b0z was solved by V.A.Meshcheryakov, F.A.Samatey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.07 / 2.45
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 49.102, 49.102, 143.045, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 24.7

Other elements in 3b0z:

The structure of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium (pdb code 3b0z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium, PDB code: 3b0z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3b0z

Go back to Zinc Binding Sites List in 3b0z
Zinc binding site 1 out of 2 in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn21

b:91.7
occ:1.00
OE2 A:GLU258 2.0 67.2 1.0
OE1 A:GLU258 2.7 63.6 1.0
CD A:GLU258 2.7 61.5 1.0
O A:HOH18 3.0 76.4 1.0
CG A:GLU258 4.2 55.3 1.0
NE A:ARG255 4.5 92.3 1.0
CG A:ARG254 4.7 71.3 1.0

Zinc binding site 2 out of 2 in 3b0z

Go back to Zinc Binding Sites List in 3b0z
Zinc binding site 2 out of 2 in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn22

b:61.2
occ:1.00
O A:HOH6 2.0 8.1 1.0
OD2 A:ASP259 2.1 45.2 1.0
OD1 A:ASP259 2.3 58.8 1.0
O A:HOH16 2.3 21.1 1.0
CG A:ASP259 2.5 51.9 1.0
CB A:ASP259 4.0 50.6 1.0
O A:ARG255 4.3 58.9 1.0
NZ A:LYS262 4.5 70.2 1.0
CE A:LYS262 4.6 62.9 1.0
CA A:ASP259 4.8 50.7 1.0
O A:HOH15 4.8 49.4 1.0

Reference:

V.A.Meshcheryakov, A.Kitao, H.Matsunami, F.A.Samatey. Inhibition of A Type III Secretion System By the Deletion of A Short Loop in One of Its Membrane Proteins Acta Crystallogr.,Sect.D V. 69 812 2013.
ISSN: ISSN 0907-4449
PubMed: 23633590
DOI: 10.1107/S0907444913002102
Page generated: Wed Dec 16 04:08:08 2020

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