Zinc in PDB 2zm6: Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit

The structure of Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit, PDB code: 2zm6 was solved by T.Kaminishi, H.Wang, M.Kawazoe, R.Ishii, F.Schluenzen, K.Hanawa-Suetsugu, D.N.Wilson, M.Nomura, C.Takemoto, M.Shirouzu, P.Fucini, S.Yokoyama, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	184.03 / 3.30
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	411.500, 411.500, 172.580, 90.00, 90.00, 90.00
R / Rfree (%)	29.2 / 32.3

The binding sites of Zinc atom in the Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit (pdb code 2zm6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit, PDB code: 2zm6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn210 b:90.7 occ:1.00 SG D:CYS9 1.8 32.6 1.0 SG D:CYS31 1.9 26.4 1.0 SG D:CYS26 1.9 49.5 1.0 CB D:CYS9 2.2 32.6 1.0 SG D:CYS12 2.6 43.0 1.0 CA D:CYS31 3.1 56.7 1.0 CB D:CYS31 3.1 26.4 1.0 CA D:CYS9 3.6 0.1 1.0 CB D:CYS26 3.6 49.5 1.0 C D:CYS31 3.8 56.7 1.0 O D:CYS31 3.8 56.7 1.0 CA D:CYS26 4.3 0.7 1.0 O D:LEU19 4.3 0.6 1.0 CB D:CYS12 4.4 43.0 1.0 N D:CYS9 4.4 0.1 1.0 O D:LYS30 4.4 0.6 1.0 N D:CYS31 4.5 56.7 1.0 CB D:LYS22 4.5 0.6 1.0 N D:LYS22 4.7 69.4 1.0 C D:CYS9 4.8 0.1 1.0 N D:CYS26 4.9 0.7 1.0 N D:ALA32 4.9 0.6 1.0 C D:LYS30 5.0 0.6 1.0 O D:CYS9 5.0 0.1 1.0 CG D:LYS22 5.0 0.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn62 b:0.7 occ:1.00 SG N:CYS43 2.0 57.9 1.0 SG N:CYS40 2.2 90.3 1.0 SG N:CYS27 2.3 48.0 1.0 SG N:CYS24 2.6 96.6 1.0 CB N:CYS27 2.7 48.0 1.0 N N:CYS27 2.8 81.8 1.0 CB N:CYS24 2.8 96.6 1.0 CB N:CYS40 2.8 90.3 1.0 CA N:CYS27 3.2 81.8 1.0 CB N:CYS43 3.3 57.9 1.0 N N:CYS40 3.3 51.5 1.0 CA N:CYS40 3.7 51.5 1.0 C N:ARG26 3.9 0.5 1.0 N N:GLY28 4.0 0.3 1.0 C N:CYS27 4.0 81.8 1.0 CB N:ARG26 4.0 0.3 1.0 CA N:CYS24 4.2 0.7 1.0 CA N:ARG26 4.3 0.5 1.0 N N:ARG26 4.4 0.5 1.0 C N:LEU39 4.5 82.8 1.0 CB N:ARG29 4.5 0.6 1.0 C N:CYS24 4.6 0.7 1.0 N N:ARG29 4.6 0.4 1.0 CA N:CYS43 4.6 88.4 1.0 O N:CYS40 4.6 51.5 1.0 C N:CYS40 4.7 51.5 1.0 CA N:LEU39 4.7 82.8 1.0 CG N:ARG26 4.8 0.3 1.0 O N:CYS24 4.8 0.7 1.0 N N:CYS43 4.8 88.4 1.0 CD N:ARG26 4.9 0.3 1.0

T.Kaminishi, H.Wang, M.Kawazoe, R.Ishii, K.Hanawa-Suetsugu, M.Nomura, C.Takemoto, M.Shirouzu, F.Paola, S.Yokoyama. Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit To Be Published.