Zinc in PDB 2zjs: Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment

The structure of Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment, PDB code: 2zjs was solved by T.Tsukazaki, H.Mori, S.Fukai, R.Ishitani, A.Perederina, D.G.Vassylyev, K.Ito, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.43 / 3.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	189.096, 103.073, 78.005, 90.00, 105.18, 90.00
R / Rfree (%)	24.4 / 28

The binding sites of Zinc atom in the Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment (pdb code 2zjs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment, PDB code: 2zjs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn223 b:97.8 occ:1.00 OE2 L:GLU185 1.8 0.1 1.0 NE2 L:HIS189 2.1 0.2 1.0 CD L:GLU185 2.9 0.1 1.0 CE1 L:HIS189 3.0 0.2 1.0 CD2 L:HIS189 3.2 0.6 1.0 OE1 L:GLU185 3.5 0.9 1.0 NH1 L:ARG155 3.8 0.1 1.0 CG L:GLU185 4.1 0.9 1.0 ND1 L:HIS189 4.2 0.7 1.0 CG L:HIS189 4.3 0.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Secye Translocon From Thermus Thermophilus with A Fab Fragment within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn435 b:89.6 occ:0.50 OD1 Y:ASP293 1.8 0.3 1.0 OE2 Y:GLU138 1.9 0.8 1.0 CG Y:ASP293 2.6 0.2 1.0 OD2 Y:ASP293 2.7 0.1 1.0 CD Y:GLU138 2.7 0.3 1.0 CG Y:GLU138 3.0 0.1 1.0 OE1 Y:GLU138 3.9 1.0 1.0 CB Y:ASP293 4.0 0.7 1.0 CB Y:GLU138 4.0 0.3 1.0 CA Y:ASP293 4.5 0.7 1.0 N Y:ASP293 4.6 0.4 1.0 NH1 Y:ARG141 4.6 0.6 1.0 CB Y:GLN292 4.8 0.6 1.0

T.Tsukazaki, H.Mori, S.Fukai, R.Ishitani, T.Mori, N.Dohmae, A.Perederina, Y.Sugita, D.G.Vassylyev, K.Ito, O.Nureki. Conformational Transition of Sec Machinery Inferred From Bacterial Secye Structures Nature V. 455 988 2008.
ISSN: ISSN 0028-0836
PubMed: 18923527
DOI: 10.1038/NATURE07421