Atomistry » Zinc » PDB 2z45-2zem » 2zc0
Atomistry »
  Zinc »
    PDB 2z45-2zem »
      2zc0 »

Zinc in PDB 2zc0: Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase

Enzymatic activity of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase

All present enzymatic activity of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase:
2.6.1.44;

Protein crystallography data

The structure of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase, PDB code: 2zc0 was solved by H.Sakuraba, K.Yoneda, H.Tsuge, T.Ohshima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.40 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.694, 112.519, 207.287, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 26.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase (pdb code 2zc0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase, PDB code: 2zc0:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2zc0

Go back to Zinc Binding Sites List in 2zc0
Zinc binding site 1 out of 4 in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn408

b:46.5
occ:1.00
N3 A:IMD410 2.0 44.4 1.0
OE2 A:GLU140 2.0 32.3 1.0
O A:HOH413 2.4 22.1 1.0
CD A:GLU140 2.8 31.0 1.0
C2 A:IMD410 2.8 44.4 1.0
OE1 A:GLU140 2.9 27.2 1.0
C4 A:IMD410 3.1 44.6 1.0
O A:HOH462 3.9 29.6 1.0
N1 A:IMD410 4.0 45.6 1.0
C5 A:IMD410 4.2 44.5 1.0
CG A:GLU140 4.2 29.5 1.0
CE A:LYS15 4.6 36.4 1.0
CD1 A:ILE146 4.7 40.8 1.0
NZ A:LYS15 4.9 32.8 1.0
CB A:ILE146 4.9 34.9 1.0

Zinc binding site 2 out of 4 in 2zc0

Go back to Zinc Binding Sites List in 2zc0
Zinc binding site 2 out of 4 in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn408

b:38.6
occ:1.00
N3 B:IMD410 1.9 44.6 1.0
OE2 B:GLU140 2.1 31.9 1.0
O B:HOH463 2.3 19.5 1.0
O B:HOH514 2.3 40.1 1.0
C2 B:IMD410 2.7 46.4 1.0
CD B:GLU140 2.9 27.8 1.0
OE1 B:GLU140 3.0 27.7 1.0
C4 B:IMD410 3.1 46.6 1.0
O B:HOH490 3.8 34.1 1.0
N1 B:IMD410 3.9 46.0 1.0
C5 B:IMD410 4.1 45.8 1.0
CG B:GLU140 4.3 27.3 1.0
CB B:ILE146 4.8 26.6 1.0
CE B:LYS15 4.8 35.6 1.0
CG1 B:ILE146 4.9 23.7 1.0

Zinc binding site 3 out of 4 in 2zc0

Go back to Zinc Binding Sites List in 2zc0
Zinc binding site 3 out of 4 in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn408

b:42.4
occ:1.00
OE2 C:GLU140 2.0 32.7 1.0
N3 C:IMD410 2.0 52.6 1.0
O C:HOH434 2.2 40.8 1.0
O C:HOH468 2.3 22.9 1.0
CD C:GLU140 2.7 31.0 1.0
OE1 C:GLU140 2.8 28.8 1.0
C2 C:IMD410 2.8 52.0 1.0
C4 C:IMD410 3.2 52.1 1.0
O C:HOH426 3.7 28.4 1.0
N1 C:IMD410 4.0 52.8 1.0
C5 C:IMD410 4.2 53.7 1.0
CG C:GLU140 4.2 32.5 1.0
CE C:LYS15 4.7 39.9 1.0
NZ C:LYS15 4.8 31.5 1.0
CB C:ILE146 4.9 34.2 1.0

Zinc binding site 4 out of 4 in 2zc0

Go back to Zinc Binding Sites List in 2zc0
Zinc binding site 4 out of 4 in the Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of An Archaeal Alanine:Glyoxylate Aminotransferase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn408

b:45.1
occ:1.00
N3 D:IMD410 2.0 52.4 1.0
OE2 D:GLU140 2.0 35.2 1.0
O D:HOH471 2.3 46.0 1.0
O D:HOH482 2.4 26.7 1.0
C2 D:IMD410 2.8 51.2 1.0
CD D:GLU140 2.9 31.3 1.0
C4 D:IMD410 3.0 51.8 1.0
OE1 D:GLU140 3.1 30.2 1.0
O D:HOH415 3.9 26.2 1.0
N1 D:IMD410 4.0 51.4 1.0
C5 D:IMD410 4.1 53.0 1.0
CG D:GLU140 4.3 28.9 1.0
CB D:ILE146 4.8 28.3 1.0
CG1 D:ILE146 4.8 28.1 1.0
CE D:LYS15 4.8 30.5 1.0
NZ D:LYS15 5.0 28.6 1.0

Reference:

H.Sakuraba, K.Yoneda, K.Takeuchi, H.Tsuge, N.Katunuma, T.Ohshima. Structure of An Archaeal Alanine:Glyoxylate Aminotransferase Acta Crystallogr.,Sect.D V. 64 696 2008.
ISSN: ISSN 0907-4449
PubMed: 18560158
DOI: 10.1107/S0907444908006732
Page generated: Wed Dec 16 04:04:48 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy