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Zinc in PDB 2yv5: Crystal Structure of Yjeq From Aquifex Aeolicus

Protein crystallography data

The structure of Crystal Structure of Yjeq From Aquifex Aeolicus, PDB code: 2yv5 was solved by H.Wang, T.Kaminishi, K.Hanawa-Suetsugu, C.Takemoto, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.95 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.139, 63.139, 157.319, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.7

Other elements in 2yv5:

The structure of Crystal Structure of Yjeq From Aquifex Aeolicus also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Yjeq From Aquifex Aeolicus (pdb code 2yv5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Yjeq From Aquifex Aeolicus, PDB code: 2yv5:

Zinc binding site 1 out of 1 in 2yv5

Go back to Zinc Binding Sites List in 2yv5
Zinc binding site 1 out of 1 in the Crystal Structure of Yjeq From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Yjeq From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:18.2
occ:1.00
ND1 A:HIS259 2.1 15.6 1.0
SG A:CYS265 2.3 17.1 1.0
CL A:CL304 2.3 18.0 1.0
SG A:CYS257 2.5 20.2 1.0
CE1 A:HIS259 2.9 17.3 1.0
CG A:HIS259 3.3 20.6 1.0
CB A:CYS265 3.4 19.9 1.0
CB A:CYS257 3.4 22.1 1.0
CA A:HIS259 3.5 15.8 1.0
N A:HIS259 3.7 11.8 1.0
CB A:HIS259 3.7 17.9 1.0
CA A:CYS265 3.9 18.6 1.0
N A:ALA266 4.0 15.7 1.0
CB A:VAL267 4.1 14.1 1.0
N A:VAL267 4.1 13.4 1.0
CG2 A:VAL267 4.1 18.5 1.0
NE2 A:HIS259 4.1 18.9 1.0
C A:CYS265 4.2 17.3 1.0
O A:HOH1046 4.3 22.6 1.0
CD2 A:HIS259 4.3 20.6 1.0
C A:CYS257 4.4 16.1 1.0
O A:CYS257 4.4 20.6 1.0
CA A:CYS257 4.5 17.3 1.0
CA A:VAL267 4.7 12.2 1.0
C A:THR258 4.8 17.9 1.0
N A:THR258 4.8 18.1 1.0
C A:HIS259 5.0 18.2 1.0

Reference:

H.Wang, T.Kaminishi, K.Hanawa-Suetsugu, C.Takemoto, T.Terada, M.Shirouzu, S.Yokoyama. Crystal Structure of Yjeq From Aquifex Aeolicus To Be Published.
Page generated: Wed Dec 16 04:03:41 2020

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