Zinc in PDB 2yur: Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6

The binding sites of Zinc atom in the Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6 (pdb code 2yur). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6, PDB code: 2yur:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS42 2.2 0.0 1.0 SG A:CYS18 2.2 0.0 1.0 SG A:CYS21 2.3 0.0 1.0 SG A:CYS39 2.3 0.0 1.0 H A:CYS21 2.8 0.0 1.0 H A:CYS39 3.3 0.0 1.0 H A:ASP23 3.3 0.0 1.0 HB2 A:CYS39 3.3 0.0 1.0 HB A:ILE20 3.4 0.0 1.0 CB A:CYS18 3.5 0.0 1.0 HB2 A:CYS42 3.5 0.0 1.0 CB A:CYS39 3.5 0.0 1.0 CB A:CYS21 3.5 0.0 1.0 CB A:CYS42 3.5 0.0 1.0 HB3 A:CYS18 3.5 0.0 1.0 HB3 A:CYS21 3.6 0.0 1.0 N A:CYS21 3.6 0.0 1.0 HB2 A:CYS18 3.7 0.0 1.0 HB3 A:ASP23 3.7 0.0 1.0 H A:LYS22 3.9 0.0 1.0 HB3 A:CYS42 3.9 0.0 1.0 CA A:CYS21 4.0 0.0 1.0 N A:CYS39 4.1 0.0 1.0 O A:ASP23 4.1 0.0 1.0 N A:ASP23 4.2 0.0 1.0 N A:LYS22 4.2 0.0 1.0 HB3 A:CYS39 4.3 0.0 1.0 HG23 A:ILE20 4.4 0.0 1.0 CB A:ILE20 4.4 0.0 1.0 C A:CYS21 4.4 0.0 1.0 H A:ILE20 4.4 0.0 1.0 HG3 A:MET25 4.4 0.0 1.0 HB2 A:CYS21 4.4 0.0 1.0 CA A:CYS39 4.5 0.0 1.0 CB A:ASP23 4.5 0.0 1.0 HB2 A:ASP23 4.6 0.0 1.0 HA A:TYR38 4.6 0.0 1.0 HD13 A:ILE20 4.7 0.0 1.0 HG22 A:ILE20 4.7 0.0 1.0 H A:CYS18 4.7 0.0 1.0 CA A:ASP23 4.7 0.0 1.0 CG2 A:ILE20 4.7 0.0 1.0 H A:CYS42 4.7 0.0 1.0 C A:ILE20 4.8 0.0 1.0 CA A:CYS42 4.8 0.0 1.0 CA A:CYS18 4.8 0.0 1.0 C A:ASP23 4.9 0.0 1.0 HA A:CYS42 4.9 0.0 1.0 CA A:ILE20 5.0 0.0 1.0 HD1 A:TYR38 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS58 2.2 0.0 1.0 SG A:CYS55 2.3 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 H A:CYS58 2.7 0.0 1.0 HB2 A:CYS33 3.1 0.0 1.0 HB A:THR57 3.1 0.0 1.0 HB3 A:CYS55 3.2 0.0 1.0 HG22 A:ILE31 3.2 0.0 1.0 HB3 A:CYS34 3.2 0.0 1.0 CB A:CYS55 3.3 0.0 1.0 CB A:CYS33 3.3 0.0 1.0 CB A:CYS34 3.4 0.0 1.0 H A:CYS34 3.4 0.0 1.0 HB2 A:CYS55 3.5 0.0 1.0 N A:CYS58 3.5 0.0 1.0 CB A:CYS58 3.5 0.0 1.0 HD13 A:ILE31 3.6 0.0 1.0 N A:CYS34 3.6 0.0 1.0 O A:CYS58 3.6 0.0 1.0 HB3 A:CYS58 3.7 0.0 1.0 HG21 A:ILE31 3.9 0.0 1.0 CA A:CYS58 3.9 0.0 1.0 CG2 A:ILE31 4.0 0.0 1.0 H A:GLY35 4.1 0.0 1.0 HB2 A:GLN60 4.1 0.0 1.0 HB3 A:CYS33 4.1 0.0 1.0 C A:CYS33 4.1 0.0 1.0 CA A:CYS34 4.1 0.0 1.0 CB A:THR57 4.2 0.0 1.0 HB2 A:CYS34 4.2 0.0 1.0 C A:CYS58 4.2 0.0 1.0 CA A:CYS33 4.3 0.0 1.0 HD11 A:ILE31 4.3 0.0 1.0 HB2 A:CYS58 4.4 0.0 1.0 HG1 A:THR57 4.4 0.0 1.0 CD1 A:ILE31 4.4 0.0 1.0 C A:THR57 4.5 0.0 1.0 H A:THR57 4.6 0.0 1.0 HG23 A:VAL63 4.6 0.0 1.0 HG21 A:THR57 4.6 0.0 1.0 HG23 A:ILE31 4.6 0.0 1.0 HD21 A:ASN36 4.6 0.0 1.0 HG12 A:ILE31 4.7 0.0 1.0 CA A:CYS55 4.7 0.0 1.0 HG3 A:GLN60 4.7 0.0 1.0 CA A:THR57 4.8 0.0 1.0 O A:CYS33 4.8 0.0 1.0 OG1 A:THR57 4.8 0.0 1.0 N A:THR57 4.9 0.0 1.0 HD2 A:PRO56 4.9 0.0 1.0 HA A:CYS34 4.9 0.0 1.0 N A:GLY35 4.9 0.0 1.0 HA A:CYS58 5.0 0.0 1.0 CG2 A:THR57 5.0 0.0 1.0 CG1 A:ILE31 5.0 0.0 1.0

H.Abe, K.Miyamoto, N.Tochio, T.Tomizawa, S.Koshiba, T.Harada, S.Watanabe, T.Kigawa, S.Yokoyama. Solution Structure of the Ring Finger of Human Retinoblastoma-Binding Protein 6 To Be Published.