Zinc in PDB 2yt9: Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278

The binding sites of Zinc atom in the Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278 (pdb code 2yt9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278, PDB code: 2yt9:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 NE2 A:HIS384 2.0 0.0 1.0 NE2 A:HIS380 2.1 0.0 1.0 SG A:CYS367 2.2 0.0 1.0 SG A:CYS364 2.4 0.0 1.0 CD2 A:HIS384 2.8 0.0 1.0 CD2 A:HIS380 2.9 0.0 1.0 HB A:ILE366 3.0 0.0 1.0 HD2 A:HIS380 3.0 0.0 1.0 HD2 A:HIS384 3.0 0.0 1.0 CE1 A:HIS384 3.1 0.0 1.0 H A:CYS367 3.1 0.0 1.0 CE1 A:HIS380 3.2 0.0 1.0 HB3 A:CYS364 3.4 0.0 1.0 HE1 A:HIS384 3.4 0.0 1.0 CB A:CYS364 3.4 0.0 1.0 HB3 A:CYS367 3.5 0.0 1.0 CB A:CYS367 3.5 0.0 1.0 HE1 A:HIS380 3.5 0.0 1.0 HD12 A:ILE366 3.6 0.0 1.0 HB2 A:CYS364 3.6 0.0 1.0 N A:CYS367 3.7 0.0 1.0 HB2 A:LYS369 3.9 0.0 1.0 CG A:HIS384 4.0 0.0 1.0 CB A:ILE366 4.0 0.0 1.0 H A:GLY368 4.1 0.0 1.0 ND1 A:HIS384 4.1 0.0 1.0 HD3 A:LYS369 4.1 0.0 1.0 CG A:HIS380 4.1 0.0 1.0 ND1 A:HIS380 4.2 0.0 1.0 CA A:CYS367 4.2 0.0 1.0 H A:ILE366 4.2 0.0 1.0 H A:LYS369 4.2 0.0 1.0 HB2 A:CYS367 4.3 0.0 1.0 HG23 A:ILE366 4.5 0.0 1.0 CD1 A:ILE366 4.5 0.0 1.0 C A:ILE366 4.5 0.0 1.0 HD11 A:ILE366 4.6 0.0 1.0 HG22 A:ILE366 4.6 0.0 1.0 HE1 A:PHE371 4.6 0.0 1.0 CG2 A:ILE366 4.6 0.0 1.0 HZ A:PHE371 4.7 0.0 1.0 CA A:ILE366 4.7 0.0 1.0 N A:ILE366 4.8 0.0 1.0 N A:GLY368 4.8 0.0 1.0 CA A:CYS364 4.9 0.0 1.0 CG1 A:ILE366 4.9 0.0 1.0 CD A:LYS369 4.9 0.0 1.0 CB A:LYS369 4.9 0.0 1.0 HD2 A:LYS369 4.9 0.0 1.0 HD1 A:HIS384 5.0 0.0 1.0 HG3 A:LYS369 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 NE2 A:HIS412 1.9 0.0 1.0 NE2 A:HIS408 1.9 0.0 1.0 SG A:CYS395 2.4 0.0 1.0 SG A:CYS392 2.4 0.0 1.0 CD2 A:HIS408 2.5 0.0 1.0 CD2 A:HIS412 2.6 0.0 1.0 HD2 A:HIS408 2.8 0.0 1.0 HD2 A:HIS412 2.8 0.0 1.0 CE1 A:HIS408 2.8 0.0 1.0 CE1 A:HIS412 2.9 0.0 1.0 HB2 A:CYS395 3.1 0.0 1.0 H A:CYS395 3.2 0.0 1.0 HB2 A:CYS392 3.2 0.0 1.0 CB A:CYS392 3.3 0.0 1.0 HE1 A:HIS408 3.3 0.0 1.0 HB3 A:CYS392 3.3 0.0 1.0 HE1 A:HIS412 3.4 0.0 1.0 CB A:CYS395 3.4 0.0 1.0 CG A:HIS408 3.5 0.0 1.0 ND1 A:HIS408 3.6 0.0 1.0 HB A:VAL394 3.7 0.0 1.0 CG A:HIS412 3.8 0.0 1.0 ND1 A:HIS412 3.9 0.0 1.0 N A:CYS395 4.0 0.0 1.0 HA A:VAL409 4.1 0.0 1.0 O A:HIS408 4.1 0.0 1.0 HB3 A:CYS395 4.2 0.0 1.0 CA A:CYS395 4.3 0.0 1.0 H A:GLY396 4.5 0.0 1.0 HD1 A:HIS408 4.5 0.0 1.0 C A:HIS408 4.6 0.0 1.0 H A:VAL394 4.7 0.0 1.0 CA A:CYS392 4.7 0.0 1.0 CB A:VAL394 4.8 0.0 1.0 HD1 A:HIS412 4.8 0.0 1.0 HE2 A:PHE399 4.8 0.0 1.0 HG12 A:VAL394 4.8 0.0 1.0 CB A:HIS408 4.8 0.0 1.0 HG22 A:VAL409 4.9 0.0 1.0 N A:VAL409 5.0 0.0 1.0 HA A:CYS392 5.0 0.0 1.0 HA A:CYS395 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:0.0 occ:1.00 NE2 A:HIS443 1.9 0.0 1.0 NE2 A:HIS438 2.1 0.0 1.0 SG A:CYS425 2.3 0.0 1.0 SG A:CYS422 2.4 0.0 1.0 CD2 A:HIS443 2.6 0.0 1.0 HD2 A:HIS443 2.6 0.0 1.0 H A:CYS425 2.7 0.0 1.0 CD2 A:HIS438 2.8 0.0 1.0 HD2 A:HIS438 2.8 0.0 1.0 CE1 A:HIS443 3.2 0.0 1.0 HB3 A:CYS422 3.2 0.0 1.0 CE1 A:HIS438 3.2 0.0 1.0 CB A:CYS422 3.3 0.0 1.0 HB2 A:SER424 3.3 0.0 1.0 HB2 A:CYS422 3.3 0.0 1.0 HB3 A:CYS425 3.5 0.0 1.0 CB A:CYS425 3.5 0.0 1.0 N A:CYS425 3.6 0.0 1.0 HE1 A:HIS443 3.6 0.0 1.0 HE1 A:HIS438 3.7 0.0 1.0 CG A:HIS443 3.8 0.0 1.0 H A:SER424 4.0 0.0 1.0 CG A:HIS438 4.0 0.0 1.0 HB3 A:SER424 4.0 0.0 1.0 ND1 A:HIS443 4.1 0.0 1.0 H A:GLY426 4.1 0.0 1.0 CB A:SER424 4.1 0.0 1.0 CA A:CYS425 4.1 0.0 1.0 HB A:VAL442 4.2 0.0 1.0 ND1 A:HIS438 4.2 0.0 1.0 HB2 A:CYS425 4.4 0.0 1.0 HG11 A:VAL442 4.5 0.0 1.0 HA A:ILE439 4.6 0.0 1.0 C A:SER424 4.6 0.0 1.0 N A:SER424 4.7 0.0 1.0 N A:GLY426 4.7 0.0 1.0 CA A:CYS422 4.7 0.0 1.0 CA A:SER424 4.7 0.0 1.0 H A:LYS427 4.8 0.0 1.0 C A:CYS425 4.9 0.0 1.0 H A:HIS443 4.9 0.0 1.0 HE1 A:PHE429 4.9 0.0 1.0 H A:GLN423 5.0 0.0 1.0

N.Kasahara, K.Tsuda, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama. Solution Structure of C2H2 Type Zinc Finger Domain 345 in Zinc Finger Protein 278 To Be Published.