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Zinc in PDB 2yrt: Solution Structure of the Chord Domain of Human Chord- Containing Protein 1

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 (pdb code 2yrt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1, PDB code: 2yrt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2yrt

Go back to Zinc Binding Sites List in 2yrt
Zinc binding site 1 out of 2 in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS71 2.0 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS17 2.4 0.0 1.0
SG A:CYS12 2.4 0.0 1.0
CE1 A:HIS71 2.8 0.0 1.0
CG A:HIS71 3.0 0.0 1.0
HA A:HIS71 3.0 0.0 1.0
HE1 A:HIS71 3.0 0.0 1.0
HB2 A:CYS12 3.1 0.0 1.0
HB3 A:CYS17 3.1 0.0 1.0
CB A:CYS12 3.2 0.0 1.0
CB A:CYS17 3.2 0.0 1.0
HD21 A:ASN14 3.3 0.0 1.0
HB3 A:HIS71 3.3 0.0 1.0
HB2 A:CYS31 3.3 0.0 1.0
CB A:CYS31 3.4 0.0 1.0
HB2 A:CYS17 3.4 0.0 1.0
HB3 A:CYS12 3.5 0.0 1.0
CB A:HIS71 3.5 0.0 1.0
HA A:CYS31 3.6 0.0 1.0
CA A:HIS71 3.7 0.0 1.0
NE2 A:HIS71 3.8 0.0 1.0
CD2 A:HIS71 3.9 0.0 1.0
H A:THR32 4.0 0.0 1.0
HB2 A:ASN14 4.0 0.0 1.0
CA A:CYS31 4.0 0.0 1.0
ND2 A:ASN14 4.2 0.0 1.0
H A:ASN72 4.2 0.0 1.0
HB3 A:CYS31 4.3 0.0 1.0
HB3 A:TYR33 4.4 0.0 1.0
H A:GLN19 4.4 0.0 1.0
N A:HIS71 4.5 0.0 1.0
N A:THR32 4.5 0.0 1.0
HB2 A:HIS71 4.5 0.0 1.0
H A:HIS71 4.6 0.0 1.0
HB3 A:PHE21 4.6 0.0 1.0
HD1 A:TYR33 4.6 0.0 1.0
C A:CYS31 4.6 0.0 1.0
HD22 A:ASN14 4.6 0.0 1.0
HD1 A:PHE21 4.7 0.0 1.0
HE2 A:HIS71 4.7 0.0 1.0
CA A:CYS12 4.7 0.0 1.0
CA A:CYS17 4.7 0.0 1.0
O A:GLN19 4.7 0.0 1.0
HB2 A:GLN19 4.7 0.0 1.0
HA A:CYS12 4.9 0.0 1.0
H A:ASN14 4.9 0.0 1.0
C A:HIS71 4.9 0.0 1.0
H A:GLY18 4.9 0.0 1.0
HD2 A:HIS71 4.9 0.0 1.0
N A:ASN72 4.9 0.0 1.0
CB A:ASN14 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2yrt

Go back to Zinc Binding Sites List in 2yrt
Zinc binding site 2 out of 2 in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS34 1.9 0.0 1.0
SG A:CYS49 2.2 0.0 1.0
SG A:CYS50 2.3 0.0 1.0
SG A:CYS66 2.4 0.0 1.0
CE1 A:HIS34 2.6 0.0 1.0
HE1 A:HIS34 2.8 0.0 1.0
HB3 A:CYS66 2.9 0.0 1.0
H A:CYS66 3.1 0.0 1.0
CG A:HIS34 3.1 0.0 1.0
HB3 A:CYS50 3.2 0.0 1.0
H A:CYS50 3.2 0.0 1.0
CB A:CYS66 3.3 0.0 1.0
CB A:CYS50 3.3 0.0 1.0
HB3 A:HIS34 3.3 0.0 1.0
HB2 A:TRP47 3.3 0.0 1.0
HB2 A:CYS49 3.4 0.0 1.0
CB A:CYS49 3.5 0.0 1.0
HA A:HIS34 3.5 0.0 1.0
N A:CYS50 3.6 0.0 1.0
CB A:HIS34 3.7 0.0 1.0
N A:CYS66 3.8 0.0 1.0
NE2 A:HIS34 3.8 0.0 1.0
HD2 A:PRO35 3.9 0.0 1.0
CD2 A:HIS34 4.1 0.0 1.0
CA A:CYS50 4.1 0.0 1.0
HB2 A:CYS66 4.1 0.0 1.0
C A:CYS49 4.1 0.0 1.0
CA A:CYS66 4.1 0.0 1.0
CA A:HIS34 4.2 0.0 1.0
HA2 A:GLY65 4.2 0.0 1.0
CB A:TRP47 4.2 0.0 1.0
HB2 A:CYS50 4.2 0.0 1.0
HB3 A:TRP47 4.2 0.0 1.0
HB3 A:CYS49 4.3 0.0 1.0
CA A:CYS49 4.3 0.0 1.0
H A:CYS49 4.4 0.0 1.0
HG21 A:ILE63 4.6 0.0 1.0
CG A:TRP47 4.6 0.0 1.0
HE2 A:HIS34 4.6 0.0 1.0
HB2 A:HIS34 4.7 0.0 1.0
HA A:CYS50 4.7 0.0 1.0
C A:GLY65 4.8 0.0 1.0
HG1 A:THR67 4.8 0.0 1.0
H A:THR67 4.8 0.0 1.0
N A:CYS49 4.8 0.0 1.0
HD1 A:TRP47 4.9 0.0 1.0
O A:TYR33 4.9 0.0 1.0
HA A:CYS66 4.9 0.0 1.0
CD1 A:TRP47 4.9 0.0 1.0
O A:CYS49 4.9 0.0 1.0
H A:GLY36 5.0 0.0 1.0
CD A:PRO35 5.0 0.0 1.0

Reference:

N.Nameki, K.Saito, S.Koshiba, T.Kigawa, S.Yokoyama. Solution Structure of the Chord Domain of Human Chord-Containing Protein 1 To Be Published.
Page generated: Wed Dec 16 04:02:51 2020

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