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Zinc in PDB 2y50: Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution

Enzymatic activity of Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution:
3.4.24.3;

Protein crystallography data

The structure of Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution, PDB code: 2y50 was solved by U.Eckhard, H.Brandstetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.83 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.260, 108.700, 181.520, 90.00, 90.00, 90.00
R / Rfree (%) 23.204 / 28.159

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution (pdb code 2y50). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution, PDB code: 2y50:

Zinc binding site 1 out of 1 in 2y50

Go back to Zinc Binding Sites List in 2y50
Zinc binding site 1 out of 1 in the Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Collagenase G From Clostridium Histolyticum at 2.80 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1791

b:39.3
occ:1.00
 OE2 A:GLU555 2.0 67.5 1.0
NE2 A:HIS523 2.2 74.2 1.0
NE2 A:HIS527 2.2 70.4 1.0
O A:HOH2123 2.3 57.5 1.0
CD2 A:HIS523 2.7 65.9 1.0
CD A:GLU555 2.9 61.5 1.0
CD2 A:HIS527 3.0 62.4 1.0
CE1 A:HIS527 3.1 64.7 1.0
OE1 A:GLU555 3.2 62.3 1.0
CE1 A:HIS523 3.4 70.4 1.0
OE2 A:GLU524 3.4 61.5 1.0
CG A:HIS523 3.9 63.1 1.0
CD A:GLU524 4.0 60.1 1.0
O A:HOH2076 4.0 60.4 1.0
ND1 A:HIS527 4.1 61.3 1.0
CG A:HIS527 4.1 59.2 1.0
CG A:GLU555 4.2 57.7 1.0
CB A:ALA558 4.2 44.7 1.0
OE1 A:GLU524 4.2 58.2 1.0
ND1 A:HIS523 4.2 67.5 1.0
O A:HOH2078 4.5 56.2 1.0
O A:HIS523 4.7 54.9 1.0
CA A:GLU555 4.8 52.5 1.0
C A:HIS523 5.0 55.3 1.0

Reference:

U.Eckhard, E.Schoenauer, D.Nuess, H.Brandstetter. Structure of Collagenase G Reveals A Chew-and -Digest Mechanism of Bacterial Collagenolysis Nat.Struct.Mol.Biol. V. 18 1109 2011.
ISSN: ISSN 1545-9993
PubMed: 21947205
DOI: 10.1038/NSMB.2127
Page generated: Wed Aug 20 07:01:19 2025

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