Zinc in PDB 2xbl: Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product

The structure of Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product, PDB code: 2xbl was solved by N.J.Harmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.77 / 1.62
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.200, 83.680, 126.100, 90.00, 90.00, 90.00
R / Rfree (%)	14.6 / 17.9

The binding sites of Zinc atom in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product (pdb code 2xbl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product, PDB code: 2xbl:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1197 b:11.2 occ:1.00 OE2 A:GLU68 2.0 11.6 1.0 NE2 A:HIS183 2.0 11.7 1.0 NE2 A:HIS64 2.0 9.0 1.0 OE1 D:GLN175 2.0 10.5 1.0 CD A:GLU68 2.7 14.9 1.0 OE1 A:GLU68 2.9 11.8 1.0 CE1 A:HIS183 3.0 8.7 1.0 CD2 A:HIS183 3.0 11.1 1.0 CD2 A:HIS64 3.0 14.0 1.0 CE1 A:HIS64 3.0 11.0 1.0 CD D:GLN175 3.1 14.7 1.0 O3 D:M7P1199 3.6 20.1 1.0 NE2 D:GLN175 3.6 10.2 1.0 ND1 A:HIS183 4.1 11.8 1.0 ND1 A:HIS64 4.1 12.8 1.0 CG A:HIS183 4.1 13.1 1.0 CG A:GLU68 4.1 11.8 1.0 CG A:HIS64 4.1 12.3 1.0 O D:HOH2208 4.3 23.7 1.0 CG D:GLN175 4.4 9.6 1.0 CB D:GLN175 4.5 8.5 1.0 CD1 A:LEU179 4.5 15.9 1.0 CA D:GLY57 4.8 14.0 1.0 CA D:PRO172 4.9 13.8 1.0 CE1 A:PHE73 4.9 13.1 1.0 C3 D:M7P1199 4.9 18.0 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1196 b:13.5 occ:1.00 OE1 B:GLU68 2.0 11.1 1.0 NE2 B:HIS183 2.0 11.0 1.0 NE2 B:HIS64 2.0 10.7 1.0 OE1 C:GLN175 2.0 10.1 1.0 CD B:GLU68 2.7 17.4 1.0 OE2 B:GLU68 2.8 15.6 1.0 CE1 B:HIS183 3.0 10.5 1.0 CD2 B:HIS64 3.0 11.8 1.0 CD2 B:HIS183 3.0 14.9 1.0 CE1 B:HIS64 3.0 14.3 1.0 CD C:GLN175 3.1 14.1 1.0 NE2 C:GLN175 3.6 10.2 1.0 O3 C:M7P1197 3.7 16.7 1.0 ND1 B:HIS183 4.1 12.5 1.0 CG B:GLU68 4.1 11.3 1.0 ND1 B:HIS64 4.1 11.9 1.0 CG B:HIS183 4.1 13.1 1.0 CG B:HIS64 4.1 13.9 1.0 CG C:GLN175 4.3 12.4 1.0 CB C:GLN175 4.4 10.8 1.0 CD1 B:LEU179 4.5 13.2 1.0 CE1 B:PHE73 4.6 19.3 1.0 CA C:PRO172 4.7 14.1 1.0 O C:HOH2218 4.7 35.6 1.0 CA C:GLY57 4.7 13.4 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1196 b:13.6 occ:1.00 OE2 C:GLU68 1.9 13.3 1.0 NE2 C:HIS64 2.0 9.4 1.0 OE1 B:GLN175 2.0 11.5 1.0 NE2 C:HIS183 2.1 17.3 1.0 CD C:GLU68 2.7 14.4 1.0 OE1 C:GLU68 2.8 12.3 1.0 CD2 C:HIS64 3.0 11.2 1.0 CD2 C:HIS183 3.0 12.7 1.0 CE1 C:HIS64 3.1 16.7 1.0 CD B:GLN175 3.1 9.0 1.0 CE1 C:HIS183 3.1 13.2 1.0 NE2 B:GLN175 3.6 10.6 1.0 O3 B:M7P1197 3.6 17.4 1.0 CG C:GLU68 4.1 13.9 1.0 ND1 C:HIS64 4.1 11.1 1.0 CG C:HIS64 4.1 14.3 1.0 CG C:HIS183 4.2 13.6 1.0 ND1 C:HIS183 4.2 11.4 1.0 CG B:GLN175 4.4 12.5 1.0 CD1 C:LEU179 4.5 15.8 1.0 CB B:GLN175 4.5 14.0 1.0 CE1 C:PHE73 4.6 18.9 1.0 CA B:GLY57 4.6 12.4 1.0 CA B:PRO172 4.8 12.8 1.0 O B:HOH2245 4.8 28.5 1.0 C3 B:M7P1197 5.0 15.8 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Gmha From Burkholderia Pseudomallei in Complex with Product within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1198 b:12.2 occ:1.00 OE2 D:GLU68 2.0 11.5 1.0 OE1 A:GLN175 2.0 9.0 1.0 NE2 D:HIS183 2.0 11.3 1.0 NE2 D:HIS64 2.1 10.8 1.0 CD D:GLU68 2.7 12.2 1.0 OE1 D:GLU68 2.8 12.2 1.0 CD2 D:HIS64 2.9 13.2 1.0 CD2 D:HIS183 3.0 13.8 1.0 CE1 D:HIS183 3.0 11.1 1.0 CD A:GLN175 3.0 13.9 1.0 CE1 D:HIS64 3.1 10.1 1.0 NE2 A:GLN175 3.6 9.6 1.0 O3 A:M7P1198 3.7 17.8 1.0 CG D:GLU68 4.1 10.7 1.0 ND1 D:HIS183 4.1 12.7 1.0 CG D:HIS183 4.1 10.2 1.0 CG D:HIS64 4.1 12.4 1.0 ND1 D:HIS64 4.2 10.9 1.0 CG A:GLN175 4.3 11.3 1.0 CB A:GLN175 4.4 11.4 1.0 CE1 D:PHE73 4.5 15.2 1.0 CD1 D:LEU179 4.6 11.8 1.0 CA A:PRO172 4.6 12.0 1.0 CA A:GLY57 4.7 8.9 1.0 CB A:PRO172 4.9 11.3 1.0 C3 A:M7P1198 5.0 20.2 1.0

N.J.Harmer, N.J.Harmer. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 20447408
DOI: 10.1016/J.JMB.2010.04.058