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Zinc in PDB 2xb4: Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas

Enzymatic activity of Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas

All present enzymatic activity of Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas:
2.7.4.3;

Protein crystallography data

The structure of Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas, PDB code: 2xb4 was solved by A.Mukhopadhyay, A.V.Kladova, O.Y.Gavel, J.J.Calvete, V.L.Shnyrov, I.Moura, J.J.G.Moura, S.A.Bursakov, M.J.Romao, J.Trincao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.92 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 39.390, 119.440, 149.590, 90.00, 90.00, 90.00
R / Rfree (%) 17.793 / 21.152

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas (pdb code 2xb4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas, PDB code: 2xb4:

Zinc binding site 1 out of 1 in 2xb4

Go back to Zinc Binding Sites List in 2xb4
Zinc binding site 1 out of 1 in the Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structures of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1224

b:14.2
occ:1.00
ND1 A:HIS135 2.0 13.9 1.0
SG A:CYS129 2.3 15.7 1.0
SG A:CYS151 2.3 13.6 1.0
SG A:CYS154 2.3 15.7 1.0
CE1 A:HIS135 3.0 16.6 1.0
CG A:HIS135 3.1 18.2 1.0
CB A:CYS151 3.1 12.0 1.0
CB A:CYS129 3.3 11.9 1.0
CB A:HIS135 3.5 12.6 1.0
CB A:CYS154 3.6 16.3 1.0
N A:CYS154 3.8 14.3 1.0
NE2 A:HIS135 4.1 16.4 1.0
CD2 A:HIS135 4.2 14.6 1.0
CA A:CYS154 4.2 15.8 1.0
CB A:VAL153 4.3 11.4 1.0
O A:ASN132 4.5 14.7 1.0
N A:GLY156 4.5 16.1 1.0
CA A:CYS151 4.6 13.4 1.0
N A:ASN132 4.7 16.2 1.0
CA A:CYS129 4.7 12.4 1.0
C A:CYS154 4.7 15.5 1.0
C A:VAL153 4.8 13.5 1.0
CB A:ASN131 4.8 17.2 1.0
N A:GLY155 4.8 15.9 1.0
CA A:GLY156 4.9 17.7 1.0
CB A:ASN132 4.9 17.7 1.0
N A:VAL153 4.9 14.1 1.0
CA A:VAL153 5.0 12.8 1.0
CA A:HIS135 5.0 15.6 1.0

Reference:

A.Mukhopadhyay, A.V.Kladova, S.A.Bursakov, O.Y.Gavel, J.J.Calvete, V.L.Shnyrov, I.Moura, J.J.G.Moura, M.J.Romao, J.Trincao. Crystal Structure of the Zinc-, Cobalt-, and Iron- Containing Adenylate Kinase From Desulfovibrio Gigas: A Novel Metal-Containing Adenylate Kinase From Gram-Negative Bacteria. J.Biol.Inorg.Chem. V. 16 51 2011.
ISSN: ISSN 0949-8257
PubMed: 20821240
DOI: 10.1007/S00775-010-0700-8
Page generated: Wed Dec 16 03:59:39 2020

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