Zinc in PDB 2wbt: The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna

The structure of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna, PDB code: 2wbt was solved by B.J.Eilers, S.Menon, A.B.Windham, P.Kraft, M.Dlakic, M.J.Young, C.M.Lawrence, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.70
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	51.378, 120.464, 51.687, 90.00, 90.00, 90.00
R / Rfree (%)	23.1 / 26.9

The binding sites of Zinc atom in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna (pdb code 2wbt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna, PDB code: 2wbt:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1130 b:48.3 occ:1.00 OE1 A:GLU98 2.2 24.5 1.0 SG A:CYS80 2.2 27.6 1.0 NE2 A:HIS93 2.3 32.6 1.0 SG A:CYS77 2.3 26.7 1.0 CB A:CYS80 3.1 24.8 1.0 CB A:CYS77 3.1 24.7 1.0 CD A:GLU98 3.2 24.5 1.0 CD2 A:HIS93 3.3 32.0 1.0 CE1 A:HIS93 3.3 32.6 1.0 N A:CYS80 3.3 23.0 1.0 CG A:GLU98 3.5 24.5 1.0 CA A:CYS80 3.8 23.8 1.0 CB A:GLU98 3.9 24.4 1.0 OE2 A:GLU98 4.3 24.5 1.0 C A:LEU79 4.3 22.9 1.0 CB A:LEU79 4.4 22.7 1.0 ND1 A:HIS93 4.4 32.0 1.0 CG A:HIS93 4.4 29.1 1.0 CA A:CYS77 4.5 23.8 1.0 C A:CYS80 4.7 22.9 1.0 CA A:LEU79 4.7 22.7 1.0 N A:LEU79 4.7 22.7 1.0 C A:CYS77 4.8 23.0 1.0 CA A:GLU98 4.8 24.4 1.0 O A:CYS77 4.9 22.4 1.0 N A:LEU81 4.9 22.3 1.0

Zinc binding site 2 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1131 b:38.9 occ:1.00 NE2 A:HIS119 2.0 23.5 1.0 SG A:CYS106 2.1 26.1 1.0 NE2 A:HIS124 2.2 27.2 1.0 SG A:CYS103 2.3 24.4 1.0 CB A:CYS106 2.9 25.9 1.0 CD2 A:HIS119 2.9 23.9 1.0 CD2 A:HIS124 3.0 27.2 1.0 CB A:CYS103 3.0 24.8 1.0 CE1 A:HIS119 3.1 23.5 1.0 CE1 A:HIS124 3.2 27.5 1.0 N A:CYS106 3.3 25.8 1.0 CA A:CYS106 3.6 25.9 1.0 CG A:HIS124 4.1 27.0 1.0 CG A:HIS119 4.1 24.3 1.0 ND1 A:HIS119 4.2 23.6 1.0 ND1 A:HIS124 4.2 27.3 1.0 CB A:VAL105 4.3 25.7 1.0 C A:CYS106 4.3 25.8 1.0 N A:LYS107 4.4 25.9 1.0 C A:VAL105 4.4 25.8 1.0 CA A:CYS103 4.5 24.9 1.0 CA A:VAL105 4.8 25.7 1.0 O A:CYS103 4.8 25.0 1.0 C A:CYS103 4.8 25.0 1.0 N A:VAL105 4.8 25.6 1.0 CB A:LYS108 4.9 25.8 0.5 N A:LYS108 4.9 25.8 0.5 N A:LYS108 4.9 25.8 0.5

Zinc binding site 3 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1129 b:37.6 occ:1.00 SG B:CYS77 2.1 26.6 1.0 NE2 B:HIS93 2.2 32.6 1.0 OE1 B:GLU98 2.2 23.8 1.0 SG B:CYS80 2.2 27.5 1.0 CB B:CYS80 3.0 24.8 1.0 CD B:GLU98 3.0 23.8 1.0 CD2 B:HIS93 3.1 32.0 1.0 CB B:CYS77 3.1 24.8 1.0 CE1 B:HIS93 3.2 32.6 1.0 CG B:GLU98 3.6 23.8 1.0 N B:CYS80 3.7 23.1 1.0 CA B:CYS80 4.0 23.9 1.0 CB B:GLU98 4.0 23.7 1.0 OE2 B:GLU98 4.0 23.8 1.0 CG B:HIS93 4.2 29.1 1.0 ND1 B:HIS93 4.3 32.0 1.0 CA B:CYS77 4.5 23.8 1.0 CB B:LEU79 4.7 22.7 1.0 C B:LEU79 4.7 22.9 1.0 CA B:GLU98 4.8 23.7 1.0 C B:CYS80 4.8 23.0 1.0 N B:LEU81 4.8 22.8 1.0 C B:CYS77 4.9 23.0 1.0 N B:LEU79 5.0 22.7 1.0

Zinc binding site 4 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1130 b:46.9 occ:1.00 SG B:CYS103 2.2 24.5 1.0 SG B:CYS106 2.2 29.5 1.0 NE2 B:HIS119 2.2 23.5 1.0 NE2 B:HIS124 2.2 27.4 1.0 CB B:CYS106 2.9 27.7 1.0 CD2 B:HIS119 3.0 23.9 1.0 CD2 B:HIS124 3.0 27.3 1.0 CB B:CYS103 3.0 24.8 1.0 CE1 B:HIS124 3.2 27.7 1.0 N B:CYS106 3.3 26.6 1.0 CE1 B:HIS119 3.3 23.4 1.0 CA B:CYS106 3.6 27.1 1.0 CG B:HIS124 4.1 27.0 1.0 ND1 B:HIS124 4.2 27.4 1.0 CG B:HIS119 4.2 24.3 1.0 C B:CYS106 4.3 26.7 1.0 ND1 B:HIS119 4.3 23.6 1.0 N B:LYS107 4.4 26.6 1.0 CA B:CYS103 4.4 24.9 1.0 CB B:VAL105 4.4 25.9 1.0 C B:VAL105 4.5 26.2 1.0 O B:CYS103 4.6 25.1 1.0 C B:CYS103 4.6 25.0 1.0 N B:VAL105 4.8 25.7 1.0 CA B:VAL105 4.8 25.9 1.0 CB B:LYS108 4.9 26.5 1.0 N B:LYS108 4.9 26.5 1.0 CG1 B:VAL105 5.0 25.9 1.0

B.J.Eilers, S.Menon, A.B.Windham, P.Kraft, M.Dlakic, M.J.Young, C.M.Lawrence. The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna To Be Published.