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Zinc in PDB 2wbt: The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna

Protein crystallography data

The structure of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna, PDB code: 2wbt was solved by B.J.Eilers, S.Menon, A.B.Windham, P.Kraft, M.Dlakic, M.J.Young, C.M.Lawrence, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 51.378, 120.464, 51.687, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 26.9

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna (pdb code 2wbt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna, PDB code: 2wbt:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2wbt

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Zinc binding site 1 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1130

b:48.3
occ:1.00
OE1 A:GLU98 2.2 24.5 1.0
SG A:CYS80 2.2 27.6 1.0
NE2 A:HIS93 2.3 32.6 1.0
SG A:CYS77 2.3 26.7 1.0
CB A:CYS80 3.1 24.8 1.0
CB A:CYS77 3.1 24.7 1.0
CD A:GLU98 3.2 24.5 1.0
CD2 A:HIS93 3.3 32.0 1.0
CE1 A:HIS93 3.3 32.6 1.0
N A:CYS80 3.3 23.0 1.0
CG A:GLU98 3.5 24.5 1.0
CA A:CYS80 3.8 23.8 1.0
CB A:GLU98 3.9 24.4 1.0
OE2 A:GLU98 4.3 24.5 1.0
C A:LEU79 4.3 22.9 1.0
CB A:LEU79 4.4 22.7 1.0
ND1 A:HIS93 4.4 32.0 1.0
CG A:HIS93 4.4 29.1 1.0
CA A:CYS77 4.5 23.8 1.0
C A:CYS80 4.7 22.9 1.0
CA A:LEU79 4.7 22.7 1.0
N A:LEU79 4.7 22.7 1.0
C A:CYS77 4.8 23.0 1.0
CA A:GLU98 4.8 24.4 1.0
O A:CYS77 4.9 22.4 1.0
N A:LEU81 4.9 22.3 1.0

Zinc binding site 2 out of 4 in 2wbt

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Zinc binding site 2 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1131

b:38.9
occ:1.00
NE2 A:HIS119 2.0 23.5 1.0
SG A:CYS106 2.1 26.1 1.0
NE2 A:HIS124 2.2 27.2 1.0
SG A:CYS103 2.3 24.4 1.0
CB A:CYS106 2.9 25.9 1.0
CD2 A:HIS119 2.9 23.9 1.0
CD2 A:HIS124 3.0 27.2 1.0
CB A:CYS103 3.0 24.8 1.0
CE1 A:HIS119 3.1 23.5 1.0
CE1 A:HIS124 3.2 27.5 1.0
N A:CYS106 3.3 25.8 1.0
CA A:CYS106 3.6 25.9 1.0
CG A:HIS124 4.1 27.0 1.0
CG A:HIS119 4.1 24.3 1.0
ND1 A:HIS119 4.2 23.6 1.0
ND1 A:HIS124 4.2 27.3 1.0
CB A:VAL105 4.3 25.7 1.0
C A:CYS106 4.3 25.8 1.0
N A:LYS107 4.4 25.9 1.0
C A:VAL105 4.4 25.8 1.0
CA A:CYS103 4.5 24.9 1.0
CA A:VAL105 4.8 25.7 1.0
O A:CYS103 4.8 25.0 1.0
C A:CYS103 4.8 25.0 1.0
N A:VAL105 4.8 25.6 1.0
CB A:LYS108 4.9 25.8 0.5
N A:LYS108 4.9 25.8 0.5
N A:LYS108 4.9 25.8 0.5

Zinc binding site 3 out of 4 in 2wbt

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Zinc binding site 3 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1129

b:37.6
occ:1.00
SG B:CYS77 2.1 26.6 1.0
NE2 B:HIS93 2.2 32.6 1.0
OE1 B:GLU98 2.2 23.8 1.0
SG B:CYS80 2.2 27.5 1.0
CB B:CYS80 3.0 24.8 1.0
CD B:GLU98 3.0 23.8 1.0
CD2 B:HIS93 3.1 32.0 1.0
CB B:CYS77 3.1 24.8 1.0
CE1 B:HIS93 3.2 32.6 1.0
CG B:GLU98 3.6 23.8 1.0
N B:CYS80 3.7 23.1 1.0
CA B:CYS80 4.0 23.9 1.0
CB B:GLU98 4.0 23.7 1.0
OE2 B:GLU98 4.0 23.8 1.0
CG B:HIS93 4.2 29.1 1.0
ND1 B:HIS93 4.3 32.0 1.0
CA B:CYS77 4.5 23.8 1.0
CB B:LEU79 4.7 22.7 1.0
C B:LEU79 4.7 22.9 1.0
CA B:GLU98 4.8 23.7 1.0
C B:CYS80 4.8 23.0 1.0
N B:LEU81 4.8 22.8 1.0
C B:CYS77 4.9 23.0 1.0
N B:LEU79 5.0 22.7 1.0

Zinc binding site 4 out of 4 in 2wbt

Go back to Zinc Binding Sites List in 2wbt
Zinc binding site 4 out of 4 in the The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1130

b:46.9
occ:1.00
SG B:CYS103 2.2 24.5 1.0
SG B:CYS106 2.2 29.5 1.0
NE2 B:HIS119 2.2 23.5 1.0
NE2 B:HIS124 2.2 27.4 1.0
CB B:CYS106 2.9 27.7 1.0
CD2 B:HIS119 3.0 23.9 1.0
CD2 B:HIS124 3.0 27.3 1.0
CB B:CYS103 3.0 24.8 1.0
CE1 B:HIS124 3.2 27.7 1.0
N B:CYS106 3.3 26.6 1.0
CE1 B:HIS119 3.3 23.4 1.0
CA B:CYS106 3.6 27.1 1.0
CG B:HIS124 4.1 27.0 1.0
ND1 B:HIS124 4.2 27.4 1.0
CG B:HIS119 4.2 24.3 1.0
C B:CYS106 4.3 26.7 1.0
ND1 B:HIS119 4.3 23.6 1.0
N B:LYS107 4.4 26.6 1.0
CA B:CYS103 4.4 24.9 1.0
CB B:VAL105 4.4 25.9 1.0
C B:VAL105 4.5 26.2 1.0
O B:CYS103 4.6 25.1 1.0
C B:CYS103 4.6 25.0 1.0
N B:VAL105 4.8 25.7 1.0
CA B:VAL105 4.8 25.9 1.0
CB B:LYS108 4.9 26.5 1.0
N B:LYS108 4.9 26.5 1.0
CG1 B:VAL105 5.0 25.9 1.0

Reference:

B.J.Eilers, S.Menon, A.B.Windham, P.Kraft, M.Dlakic, M.J.Young, C.M.Lawrence. The Structure of A Double C2H2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus in the Absence of Dna To Be Published.
Page generated: Wed Dec 16 03:57:16 2020

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