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Zinc in PDB 2waz: N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein

Protein crystallography data

The structure of N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein, PDB code: 2waz was solved by J.Hendle, P.N.Kanellopoulos, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.87 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.320, 75.930, 64.635, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein (pdb code 2waz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein, PDB code: 2waz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2waz

Go back to Zinc Binding Sites List in 2waz
Zinc binding site 1 out of 2 in the N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn601

b:20.5
occ:1.00
ND1 X:HIS286 2.0 19.3 1.0
SG X:CYS339 2.3 21.3 1.0
SG X:CYS284 2.3 20.4 1.0
SG X:CYS355 2.3 20.6 1.0
CE1 X:HIS286 2.8 22.3 1.0
CB X:CYS355 3.2 21.7 1.0
CB X:CYS284 3.2 18.9 1.0
CG X:HIS286 3.3 20.2 1.0
CB X:CYS339 3.4 21.8 1.0
N X:CYS355 3.8 22.5 1.0
CB X:HIS286 3.8 19.9 1.0
N X:HIS286 3.9 20.5 1.0
NE2 X:HIS286 4.0 17.8 1.0
CA X:CYS339 4.1 22.2 1.0
CA X:CYS355 4.1 22.4 1.0
N X:LEU285 4.2 19.6 1.0
CD2 X:HIS286 4.2 18.1 1.0
O X:HOH2135 4.3 21.8 1.0
CA X:HIS286 4.5 20.6 1.0
CA X:CYS284 4.5 19.1 1.0
C X:CYS284 4.6 19.9 1.0
CD2 X:HIS341 4.6 29.2 1.0
C X:LEU285 4.9 20.7 1.0
N X:VAL340 4.9 23.2 1.0
C X:CYS339 4.9 22.5 1.0
C X:SER354 4.9 22.8 1.0
CA X:LEU285 5.0 21.1 1.0

Zinc binding site 2 out of 2 in 2waz

Go back to Zinc Binding Sites List in 2waz
Zinc binding site 2 out of 2 in the N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of N512P Mutant of the Dna Binding Domain of the Adenovirus 5 Ssdna Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn602

b:24.6
occ:1.00
SG X:CYS450 2.3 22.4 1.0
SG X:CYS398 2.3 27.9 1.0
SG X:CYS467 2.3 25.2 1.0
SG X:CYS396 2.3 19.4 1.0
CB X:CYS450 3.2 21.0 1.0
CB X:CYS398 3.3 26.0 1.0
CB X:CYS467 3.4 26.1 1.0
CB X:CYS396 3.4 18.4 1.0
CA X:CYS450 3.6 20.9 1.0
N X:CYS467 3.6 28.3 1.0
N X:CYS398 3.6 27.3 1.0
N X:CYS451 3.9 20.5 1.0
CA X:CYS467 4.0 26.6 1.0
CA X:CYS398 4.1 26.6 1.0
N X:GLU397 4.2 24.5 1.0
C X:CYS450 4.2 20.4 1.0
C X:ASN466 4.2 29.9 1.0
O X:HOH2275 4.3 29.2 1.0
CA X:ASN466 4.4 31.5 1.0
CA X:CYS396 4.6 20.4 1.0
C X:CYS396 4.6 22.5 1.0
C X:GLU397 4.7 26.9 1.0
C X:CYS467 4.8 26.5 1.0
N X:CYS450 4.9 20.5 1.0
CA X:GLU397 4.9 26.6 1.0
O X:HOH2146 4.9 29.3 1.0
O X:CYS467 4.9 25.9 1.0

Reference:

J.Hendle, P.N.Kanellopoulos, P.A.Tucker. High Resolution Structures of the Adenovirus Single-Stranded Dna Binding Protein and the N512P Hinge-Region Mutant To Be Published.
Page generated: Wed Dec 16 03:57:12 2020

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