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    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
      2vz5
      2w0d
      2w0m
      2w0t
      2w12
      2w13
      2w14
      2w15
      2w22
      2w2d
      2w3n
      2w3q
      2w3z
      2w44
      2w4l
      2w57
      2w5v
      2w5w
      2w5x
      2w5y
      2w5z
      2w88
      2w8c
      2w8s
      2w9m
      2w9n
      2wad
      2wae
      2waq
      2waz
      2wb0
      2wb1
      2wbs
      2wbt
      2wbu
      2wby
      2wc0
      2wc8
      2wcb
      2wd2
      2wd3
      2wdg
      2wdh
      2wdk
      2wdm
      2weg
      2weh
      2wej
      2weo
      2wey
    PDB 2wfq-2wx0
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    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in the structure of Crystal Structure Of The Vibrio Cholerae Ferric Uptake Regulator (Fur) Reveals Structural Rearrangement of the Dna-Binding Domains (pdb 2w57)






The binding sites of Zinc atom in the structure of Crystal Structure Of The Vibrio Cholerae Ferric Uptake Regulator (Fur) Reveals Structural Rearrangement of the Dna-Binding Domains (pdb code 2w57). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 2w57 structure was solved by M.A.SHEIKH, G.L.TAYLOR, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)62.9-2.6
Space groupP43212
a (A)88.880
b (A)88.880
c (A)85.070
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21.6
Rfree (%)25.9


Zinc Binding Sites:

Zinc binding site 1 out of 4 in 2w57


Zinc binding site 1 out of 4 in 2w57
Click to enlarge		stereopicture of Zinc binding site 1 out of 4 in 2w57
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 2w57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His87, A: His88, A: Asp89, A: Glu108, A: Gln111, A: His125, A: Hoh2042,

conact list:


AtomAtomDistance (A)
ZnNE2 A:His872.27
ZnND1 A:His874.33
ZnCD2 A:His873.32
ZnCE1 A:His873.16
ZnCG A:His874.43
ZnO A:His884.86
ZnC A:His884.85
ZnN A:Asp894.77
ZnCB A:Asp894.09
ZnOD2 A:Asp891.95
ZnOD1 A:Asp892.74
ZnCG A:Asp892.65
ZnCA A:Asp894.91
ZnOE1 A:Glu1083.20
ZnOE2 A:Glu1082.09
ZnCD A:Glu1082.99
ZnCG A:Glu1084.40
ZnNE2 A:Gln1114.51
ZnOE1 A:Gln1114.46
ZnCD A:Gln1114.91
ZnNE2 A:His1252.20
ZnND1 A:His1254.22
ZnCD2 A:His1253.32
ZnCE1 A:His1253.03
ZnCG A:His1254.39
ZnO A:Hoh20423.48

interactive model:


Zinc binding site 2 out of 4 in 2w57


Zinc binding site 2 out of 4 in 2w57
Click to enlarge		stereopicture of Zinc binding site 2 out of 4 in 2w57
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 2w57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His33, A: His71, A: Glu81, A: His88, A: His90, A: Glu101, A: Hoh2035,

conact list:


AtomAtomDistance (A)
ZnNE2 A:His332.14
ZnND1 A:His334.17
ZnCD2 A:His333.11
ZnCE1 A:His333.08
ZnCG A:His334.21
ZnNE2 A:His714.09
ZnCD2 A:His714.61
ZnCE1 A:His714.88
ZnOE1 A:Glu812.68
ZnCB A:Glu814.62
ZnOE2 A:Glu812.07
ZnCD A:Glu812.60
ZnCG A:Glu813.97
ZnNE2 A:His882.07
ZnND1 A:His884.12
ZnCD2 A:His882.95
ZnCE1 A:His883.08
ZnCG A:His884.09
ZnNE2 A:His902.36
ZnND1 A:His904.49
ZnCD2 A:His903.03
ZnCE1 A:His903.52
ZnCG A:His904.29
ZnOE2 A:Glu1013.87
ZnCD A:Glu1014.50
ZnCG A:Glu1014.56
ZnO A:Hoh20354.00

interactive model:


Zinc binding site 3 out of 4 in 2w57


Zinc binding site 3 out of 4 in 2w57
Click to enlarge		stereopicture of Zinc binding site 3 out of 4 in 2w57
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Zinc in the PDB 2w57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His87, B: Asp89, B: Glu108, B: Gln111, B: His125, B: Hoh2031, B: Hoh2034,

conact list:


AtomAtomDistance (A)
ZnNE2 B:His872.11
ZnND1 B:His873.97
ZnCD2 B:His873.35
ZnCE1 B:His872.72
ZnCG B:His874.28
ZnCB B:Asp894.19
ZnOD2 B:Asp891.93
ZnOD1 B:Asp892.96
ZnCG B:Asp892.77
ZnOE1 B:Glu1082.90
ZnOE2 B:Glu1082.11
ZnCD B:Glu1082.83
ZnCG B:Glu1084.29
ZnNE2 B:Gln1114.74
ZnOE1 B:Gln1114.25
ZnCD B:Gln1114.91
ZnNE2 B:His1252.16
ZnND1 B:His1254.28
ZnCD2 B:His1253.06
ZnCE1 B:His1253.21
ZnCG B:His1254.25
ZnO B:Hoh20314.97
ZnO B:Hoh20344.05

interactive model:


Zinc binding site 4 out of 4 in 2w57


Zinc binding site 4 out of 4 in 2w57
Click to enlarge		stereopicture of Zinc binding site 4 out of 4 in 2w57
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Zinc in the PDB 2w57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His33, B: His71, B: Glu81, B: His88, B: His90, B: Glu101, B: Hoh2025,

conact list:


AtomAtomDistance (A)
ZnNE2 B:His332.04
ZnND1 B:His334.15
ZnCD2 B:His332.99
ZnCE1 B:His333.06
ZnCG B:His334.15
ZnNE2 B:His713.72
ZnCD2 B:His714.54
ZnCE1 B:His714.37
ZnOE1 B:Glu812.71
ZnCB B:Glu814.67
ZnOE2 B:Glu812.08
ZnCD B:Glu812.65
ZnCG B:Glu814.02
ZnNE2 B:His882.08
ZnND1 B:His884.14
ZnCD2 B:His883.12
ZnCE1 B:His883.00
ZnCG B:His884.23
ZnNE2 B:His902.18
ZnND1 B:His904.28
ZnCD2 B:His903.14
ZnCE1 B:His903.17
ZnCG B:His904.30
ZnOE2 B:Glu1014.73
ZnO B:Hoh20253.79

interactive model:
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