Zinc in PDB 2vwp: Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn.

All present enzymatic activity of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn.:
1.1.1.47;

The structure of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn., PDB code: 2vwp was solved by P.J.Baker, K.L.Britton, M.Fisher, J.Esclapez, C.Pire, M.J.Bonete, J.Ferrer, D.W.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.84 / 2.01
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	60.569, 107.725, 153.646, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 22.2

The binding sites of Zinc atom in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn. (pdb code 2vwp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn., PDB code: 2vwp:

Zinc binding site 1 out of 1 in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadph and Zn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn800 b:34.7 occ:1.00 O A:HOH2245 2.2 24.1 1.0 OE1 A:GLU150 2.2 21.8 1.0 OE2 A:GLU64 2.3 25.7 1.0 NE2 A:HIS63 2.3 24.1 1.0 CD A:GLU150 3.1 21.0 1.0 CD2 A:HIS63 3.1 21.8 1.0 CD A:GLU64 3.2 24.4 1.0 CG A:GLU64 3.3 21.9 1.0 OE2 A:GLU150 3.3 20.1 1.0 CE1 A:HIS63 3.4 23.8 1.0 OD1 A:ASP38 4.2 36.5 1.0 CG A:ASP38 4.2 34.2 1.0 CG A:HIS63 4.3 23.0 1.0 OE1 A:GLU64 4.4 24.5 1.0 ND1 A:HIS63 4.4 25.4 1.0 CG A:GLU150 4.4 17.5 1.0 CD A:PRO151 4.4 18.1 1.0 N A:PRO151 4.4 18.6 1.0 CB A:PRO151 4.5 19.2 1.0 CA A:PRO151 4.5 18.0 1.0 OD2 A:ASP38 4.5 40.6 1.0 O A:HOH2033 4.6 28.1 1.0 CB A:ASP38 4.6 34.6 1.0 CB A:GLU64 4.7 20.7 1.0 CG A:PRO151 4.8 18.2 1.0 CG1 A:ILE154 4.8 16.7 1.0 CB A:GLU150 4.8 20.2 1.0 C A:GLU150 4.9 15.5 1.0

P.J.Baker, K.L.Britton, M.Fisher, J.Esclapez, C.Pire, M.J.Bonete, J.Ferrer, D.W.Rice. Active Site Dynamics in the Zinc-Dependent Medium Chain Alcohol Dehydrogenase Superfamily. Proc. Natl. Acad. Sci. V. 106 779 2009U.S.A..
ISSN: ESSN 1091-6490
PubMed: 19131516
DOI: 10.1073/PNAS.0807529106