Zinc in PDB 2vrz: Structural Analysis of Homodimeric Staphylococcal Aureus Esxa

The structure of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa, PDB code: 2vrz was solved by R.Sundaramoorthy, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.04 / 1.9
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.232, 27.636, 64.394, 90.00, 105.43, 90.00
R / Rfree (%)	18.3 / 22.3

The binding sites of Zinc atom in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa (pdb code 2vrz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa, PDB code: 2vrz:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1097 b:24.0 occ:1.00 OE2 A:GLU10 1.9 21.6 1.0 OE2 B:GLU38 1.9 18.5 1.0 O A:HOH2064 2.0 22.3 1.0 CD A:GLU10 2.8 19.4 1.0 CD B:GLU38 2.8 18.1 1.0 OE1 A:GLU10 3.0 17.1 1.0 OE1 B:GLU38 3.1 19.1 1.0 NZ A:LYS14 3.8 21.9 1.0 O B:HOH2020 4.0 19.5 1.0 CG A:GLU10 4.2 17.8 1.0 CG B:GLU38 4.2 19.0 1.0 CE A:LYS14 4.7 23.9 1.0 O A:HOH2006 4.9 15.7 1.0

Zinc binding site 2 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1098 b:38.9 occ:1.00 O A:HOH2065 2.0 31.2 1.0 OE2 A:GLU9 2.1 24.7 1.0 OE1 A:GLU9 2.6 20.6 1.0 CD A:GLU9 2.7 21.8 1.0 O A:HOH2057 4.0 27.1 1.0 CG A:GLU9 4.2 20.6 1.0 O A:HOH2002 4.4 34.9 1.0 CD A:PRO8 4.5 16.2 1.0 CB A:SER7 4.9 16.0 1.0 CG A:PRO8 4.9 16.1 1.0

Zinc binding site 3 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1099 b:26.6 occ:1.00 O A:HOH2067 1.9 29.9 1.0 OD2 A:ASP23 2.1 20.5 1.0 O A:HOH2066 2.2 22.5 1.0 OD1 A:ASP23 2.4 20.2 1.0 CG A:ASP23 2.6 17.0 1.0 O A:HOH2022 3.9 43.8 1.0 O A:HOH2024 3.9 32.7 1.0 CB A:ASP23 4.1 18.4 1.0 O A:GLY19 4.2 16.2 1.0 OE2 A:GLU70 4.3 17.4 1.0 ZN A:ZN1101 4.4 21.5 1.0 NZ A:LYS73 4.5 20.4 1.0 NH1 A:ARG26 4.8 27.1 0.5 C A:GLY19 4.9 17.2 1.0 CA A:ASP23 5.0 17.7 1.0

Zinc binding site 4 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1100 b:19.6 occ:1.00 O A:HOH2068 1.9 16.4 1.0 OE2 A:GLU53 2.1 24.6 1.0 OE1 A:GLU53 2.2 26.1 1.0 CD A:GLU53 2.5 24.1 1.0 CG A:GLU53 3.9 23.8 1.0 CB A:GLU53 4.7 21.7 1.0

Zinc binding site 5 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:21.5 occ:1.00 NZ A:LYS73 1.8 20.4 1.0 OE1 A:GLU70 1.9 18.6 1.0 CD A:GLU70 2.7 18.3 1.0 OE2 A:GLU70 2.9 17.4 1.0 CE A:LYS73 3.0 20.7 1.0 CD A:LYS73 3.2 20.9 1.0 O A:HOH2066 3.9 22.5 1.0 CG A:GLU70 4.1 18.5 1.0 NE2 A:GLN74 4.2 19.4 1.0 O A:HOH2067 4.3 29.9 1.0 ZN A:ZN1099 4.4 26.6 1.0 CG A:LYS73 4.6 17.3 1.0 CG A:GLN74 4.8 16.7 1.0

Zinc binding site 6 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1089 b:18.4 occ:1.00 OE1 B:GLU70 1.9 17.1 1.0 NZ B:LYS73 2.2 20.5 1.0 CD B:GLU70 2.8 15.5 1.0 OE2 B:GLU70 3.0 17.4 1.0 CE B:LYS73 3.0 23.0 1.0 CD B:LYS73 3.2 20.6 1.0 CG B:GLU70 4.2 15.3 1.0 NE2 B:GLN74 4.4 13.6 1.0 CG B:LYS73 4.6 18.5 1.0 O B:HOH2037 4.9 22.3 1.0 CG B:GLN74 4.9 14.7 1.0

Zinc binding site 7 out of 7 in the Structural Analysis of Homodimeric Staphylococcal Aureus Esxa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structural Analysis of Homodimeric Staphylococcal Aureus Esxa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1090 b:35.6 occ:1.00 OE2 A:GLU38 2.0 28.6 1.0 OE2 B:GLU10 2.0 23.7 1.0 OE1 A:GLU38 2.5 26.1 1.0 CD A:GLU38 2.6 26.6 1.0 CD B:GLU10 2.9 22.0 1.0 OE1 B:GLU10 3.2 22.0 1.0 CE B:LYS14 3.7 27.6 1.0 CG A:GLU38 4.1 22.3 1.0 CG B:GLU10 4.3 20.6 1.0 NZ B:LYS14 4.6 26.2 1.0 CD B:LYS14 4.8 26.7 1.0

R.Sundaramoorthy, P.K.Fyfe, W.N.Hunter. Structure of Staphylococcus Aureus Esxa Suggests A Contribution to Virulence By Action As A Transport Chaperone and/or Adaptor Protein. J.Mol.Biol. V. 383 603 2008.
ISSN: ISSN 0022-2836
PubMed: 18773907
DOI: 10.1016/J.JMB.2008.08.047