Zinc in PDB 2v25: Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate

The structure of Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate, PDB code: 2v25 was solved by A.Muller, E.Dodson, M.Del Rocio Leon-Kempis, D.J.Kelly, A.J.Wilkinson, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.08 / 1.49
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.272, 75.868, 61.708, 90.00, 103.31, 90.00
R / Rfree (%)	16.3 / 18.5

The binding sites of Zinc atom in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate (pdb code 2v25). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate, PDB code: 2v25:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1235 b:10.1 occ:0.50 NE2 A:HIS24 2.0 11.7 1.0 O A:HOH2261 2.0 24.3 1.0 O A:HOH2262 2.2 7.2 1.0 CD2 A:HIS24 3.0 11.5 1.0 CE1 A:HIS24 3.0 12.4 1.0 ND1 A:HIS24 4.1 12.9 1.0 CG A:HIS24 4.1 10.3 1.0 CB A:PRO23 4.7 8.8 1.0

Zinc binding site 2 out of 4 in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1236 b:25.9 occ:0.50 O A:HOH2265 1.9 15.8 1.0 O A:HOH2263 2.1 20.0 0.0 NE2 A:HIS220 2.3 18.3 1.0 O A:HOH2264 2.3 19.6 1.0 CE1 A:HIS220 3.2 18.8 1.0 CD2 A:HIS220 3.3 16.5 1.0 OG A:SER49 3.7 13.9 1.0 OE1 A:GLU219 4.2 13.3 0.5 O A:HOH2070 4.3 31.1 1.0 ND1 A:HIS220 4.3 19.4 1.0 O A:HOH2248 4.3 39.2 1.0 CG A:HIS220 4.4 15.4 1.0 O A:HOH2241 4.4 14.7 1.0 CB A:SER49 4.7 11.3 1.0 CB A:GLU219 4.9 12.8 1.0 CD1 A:PHE216 4.9 10.4 1.0

Zinc binding site 3 out of 4 in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1235 b:11.0 occ:0.50 NE2 B:HIS24 2.0 13.0 1.0 O B:HOH2264 2.1 23.6 1.0 O B:HOH2265 2.2 8.9 1.0 CE1 B:HIS24 3.0 13.7 1.0 CD2 B:HIS24 3.0 12.8 1.0 ND1 B:HIS24 4.1 12.0 1.0 CG B:HIS24 4.2 10.4 1.0 O B:HOH2262 4.3 53.8 1.0 CB B:PRO23 4.8 9.1 1.0 O B:HOH2115 4.8 42.9 1.0

Zinc binding site 4 out of 4 in the Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Campylobacter Jejuni Antigen PEB1A, An Aspartate and Glutamate Receptor with Bound Aspartate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1236 b:12.2 occ:0.50 OD2 B:ASP147 1.9 9.6 0.5 O B:HOH2266 2.2 8.3 1.0 O B:HOH2267 2.3 6.4 1.0 CG B:ASP147 2.9 12.6 1.0 OD1 B:ASP147 3.2 15.0 1.0 CA B:GLY122 3.7 12.6 1.0 N B:GLY122 4.0 12.6 1.0 O B:HOH2168 4.2 19.1 1.0 CB B:ASP147 4.3 11.3 1.0 CG B:LYS121 4.6 14.4 1.0 C B:LYS121 4.7 13.4 1.0 CE B:LYS121 4.8 16.9 1.0 O B:LYS121 5.0 14.5 1.0 O B:ASP147 5.0 12.2 1.0

A.Muller, M.Del Rocio Leon-Kempis, E.Dodson, K.S.Wilson, A.J.Wilkinson, D.J.Kelly. A Bacterial Virulence Factor with A Dual Role As An Adhesin and A Solute Binding-Protein: the Crystal Structure at 1.5 A Resolution of the PEB1A Protein From the Food-Borne Human Pathogen Campylobacter Jejuni J.Mol.Biol. V. 372 160 2007.
ISSN: ISSN 0022-2836
PubMed: 17631313
DOI: 10.1016/J.JMB.2007.06.041