Zinc in PDB 2rt9: Solution Structure of A Regulatory Domain of Meiosis Inhibitor

The binding sites of Zinc atom in the Solution Structure of A Regulatory Domain of Meiosis Inhibitor (pdb code 2rt9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of A Regulatory Domain of Meiosis Inhibitor, PDB code: 2rt9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of A Regulatory Domain of Meiosis Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of A Regulatory Domain of Meiosis Inhibitor within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:0.0 occ:1.00 SG A:CYS596 2.2 0.0 1.0 SG A:CYS591 2.2 0.0 1.0 SG A:CYS576 2.2 0.0 1.0 SG A:CYS573 2.2 0.0 1.0 H A:CYS576 3.1 0.0 1.0 HB3 A:CYS596 3.2 0.0 1.0 HB2 A:CYS591 3.2 0.0 1.0 CB A:CYS573 3.2 0.0 1.0 CB A:CYS596 3.2 0.0 1.0 HB3 A:CYS573 3.3 0.0 1.0 CB A:CYS591 3.3 0.0 1.0 HB2 A:ARG575 3.3 0.0 1.0 HB3 A:ARG593 3.4 0.0 1.0 HB2 A:CYS573 3.4 0.0 1.0 CB A:CYS576 3.5 0.0 1.0 HB3 A:CYS576 3.6 0.0 1.0 HB2 A:CYS596 3.6 0.0 1.0 HG A:SER578 3.7 0.0 1.0 HB3 A:CYS591 3.8 0.0 1.0 HB2 A:SER578 3.8 0.0 1.0 N A:CYS576 3.9 0.0 1.0 HB3 A:PHE598 4.1 0.0 1.0 H A:SER578 4.2 0.0 1.0 H A:ARG593 4.2 0.0 1.0 HD2 A:ARG593 4.2 0.0 1.0 CA A:CYS576 4.2 0.0 1.0 HE A:ARG593 4.2 0.0 1.0 CB A:ARG575 4.3 0.0 1.0 H A:ARG575 4.3 0.0 1.0 HB2 A:PHE598 4.3 0.0 1.0 HB3 A:ARG575 4.3 0.0 1.0 HB2 A:CYS576 4.4 0.0 1.0 CB A:ARG593 4.4 0.0 1.0 H A:PHE598 4.4 0.0 1.0 HA A:CYS591 4.4 0.0 1.0 CA A:CYS591 4.5 0.0 1.0 OG A:SER578 4.5 0.0 1.0 H A:GLY597 4.6 0.0 1.0 CA A:CYS596 4.6 0.0 1.0 HB2 A:ARG593 4.6 0.0 1.0 H A:GLN577 4.6 0.0 1.0 CA A:CYS573 4.7 0.0 1.0 CB A:SER578 4.7 0.0 1.0 HD2 A:ARG575 4.7 0.0 1.0 CB A:PHE598 4.7 0.0 1.0 H A:SER592 4.8 0.0 1.0 C A:ARG575 4.8 0.0 1.0 C A:CYS576 4.9 0.0 1.0 N A:GLY597 4.9 0.0 1.0 C A:CYS596 4.9 0.0 1.0 CA A:ARG575 4.9 0.0 1.0 CD A:ARG593 5.0 0.0 1.0 N A:ARG575 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of A Regulatory Domain of Meiosis Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of A Regulatory Domain of Meiosis Inhibitor within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn702 b:0.0 occ:1.00 NE2 A:HIS609 2.0 0.0 1.0 SG A:CYS614 2.2 0.0 1.0 SG A:CYS604 2.2 0.0 1.0 SG A:CYS601 2.2 0.0 1.0 CE1 A:HIS609 2.8 0.0 1.0 HE1 A:HIS609 3.0 0.0 1.0 CD2 A:HIS609 3.1 0.0 1.0 CB A:CYS601 3.2 0.0 1.0 HB3 A:CYS601 3.3 0.0 1.0 HA A:CYS614 3.3 0.0 1.0 H A:CYS604 3.3 0.0 1.0 CB A:CYS614 3.3 0.0 1.0 HB2 A:LEU603 3.4 0.0 1.0 HB3 A:CYS614 3.4 0.0 1.0 HD2 A:HIS609 3.5 0.0 1.0 CB A:CYS604 3.5 0.0 1.0 HB2 A:CYS601 3.5 0.0 1.0 HB3 A:CYS604 3.5 0.0 1.0 CA A:CYS614 3.8 0.0 1.0 N A:CYS604 3.9 0.0 1.0 ND1 A:HIS609 4.0 0.0 1.0 CG A:HIS609 4.1 0.0 1.0 H A:LEU603 4.2 0.0 1.0 CA A:CYS604 4.3 0.0 1.0 HB2 A:CYS614 4.3 0.0 1.0 HB2 A:CYS604 4.3 0.0 1.0 N A:CYS614 4.4 0.0 1.0 CB A:LEU603 4.4 0.0 1.0 H A:CYS614 4.5 0.0 1.0 CA A:CYS601 4.6 0.0 1.0 H A:ARG615 4.7 0.0 1.0 HD12 A:LEU603 4.7 0.0 1.0 HB3 A:LEU603 4.7 0.0 1.0 C A:LEU603 4.7 0.0 1.0 HD1 A:HIS609 4.9 0.0 1.0 HB2 A:CYS606 4.9 0.0 1.0 H A:CYS606 4.9 0.0 1.0 N A:LEU603 4.9 0.0 1.0 CA A:LEU603 4.9 0.0 1.0 H A:LEU605 5.0 0.0 1.0 C A:CYS601 5.0 0.0 1.0

S.Shoji, Y.Muto, M.Ikeda, F.He, K.Tsuda, N.Ohsawa, R.Akasaka, T.Terada, M.Wakiyama, M.Shirouzu, S.Yokoyama. The Zinc-Binding Region (Zbr) Fragment of EMI2 Can Inhibit Apc/C By Targeting Its Association with the Coactivator CDC20 and UBE2C-Mediated Ubiquitylation Febs Open Bio 2014.
ISSN: ESSN 2211-5463
DOI: 10.1016/J.FOB.2014.06.010