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Zinc in PDB 2rqb: Solution Structure of MDA5 Ctd

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of MDA5 Ctd (pdb code 2rqb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of MDA5 Ctd, PDB code: 2rqb:

Zinc binding site 1 out of 1 in 2rqb

Go back to Zinc Binding Sites List in 2rqb
Zinc binding site 1 out of 1 in the Solution Structure of MDA5 Ctd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of MDA5 Ctd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1026

b:64.3
occ:1.00
SG A:CYS964 2.4 15.3 1.0
HB2 A:CYS910 2.4 41.2 1.0
SG A:CYS962 2.4 22.4 1.0
SG A:CYS910 2.5 13.1 1.0
SG A:CYS907 2.7 14.1 1.0
HB2 A:CYS964 2.8 2.4 1.0
H A:CYS910 2.8 34.3 1.0
CB A:CYS910 2.9 62.2 1.0
H A:CYS964 3.1 53.4 1.0
CB A:CYS964 3.1 71.1 1.0
HB2 A:ASN909 3.3 11.2 1.0
N A:CYS910 3.4 35.4 1.0
HB3 A:CYS907 3.5 20.1 1.0
HB3 A:ASN909 3.5 12.2 1.0
CB A:CYS907 3.7 62.5 1.0
CA A:CYS910 3.7 23.2 1.0
HB3 A:CYS910 3.8 71.4 1.0
HG12 A:VAL912 3.9 24.4 1.0
CB A:CYS962 3.9 52.5 1.0
CB A:ASN909 3.9 53.4 1.0
HB3 A:CYS964 3.9 2.1 1.0
N A:CYS964 3.9 73.4 1.0
HB3 A:GLN966 3.9 55.5 1.0
HB2 A:CYS962 4.0 55.3 1.0
HB2 A:CYS907 4.0 53.1 1.0
H A:SER911 4.1 21.1 1.0
CA A:CYS964 4.1 3.3 1.0
HB3 A:CYS962 4.3 62.1 1.0
HB2 A:GLN966 4.3 31.4 1.0
H A:GLY965 4.3 12.1 1.0
C A:ASN909 4.4 11.3 1.0
HA A:CYS910 4.4 74.5 1.0
H A:GLN966 4.5 71.1 1.0
H A:LYS963 4.5 15.2 1.0
HD21 A:ASN909 4.6 4.5 1.0
CB A:GLN966 4.7 24.2 1.0
CA A:ASN909 4.7 3.4 1.0
N A:SER911 4.8 72.2 1.0
C A:CYS910 4.8 3.4 1.0
HE1 A:TRP968 4.8 10.2 1.0
H A:VAL912 4.8 75.2 1.0
HB2 A:LYS963 4.9 74.5 1.0
N A:LYS963 4.9 43.5 1.0
HA A:CYS964 4.9 4.1 1.0
CG1 A:VAL912 4.9 11.2 1.0
N A:GLY965 5.0 11.3 1.0
HG23 A:VAL912 5.0 5.3 1.0

Reference:

K.Takahasi, H.Kumeta, N.Tsuduki, R.Narita, T.Shigemoto, R.Hirai, M.Yoneyama, M.Horiuchi, K.Ogura, T.Fujita, F.Inagaki. Solution Structures of Cytosolic Rna Sensor MDA5 and LGP2 C-Terminal Domains: Identification of the Rna Recognition Loop in Rig-I-Like Receptors J.Biol.Chem. V. 284 17465 2009.
ISSN: ISSN 0021-9258
PubMed: 19380577
DOI: 10.1074/JBC.M109.007179
Page generated: Wed Dec 16 03:52:46 2020

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