Zinc in PDB 2rqa: Solution Structure of LGP2 Ctd

The binding sites of Zinc atom in the Solution Structure of LGP2 Ctd (pdb code 2rqa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of LGP2 Ctd, PDB code: 2rqa:

Zinc binding site 1 out of 1 in the Solution Structure of LGP2 Ctd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of LGP2 Ctd within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn679 b:62.2 occ:1.00 HB3 A:CYS612 1.8 33.1 1.0 HB2 A:CYS615 2.2 12.5 1.0 H A:CYS615 2.3 0.0 1.0 SG A:CYS615 2.3 44.5 1.0 SG A:CYS612 2.3 12.1 1.0 SG A:CYS559 2.4 4.4 1.0 H A:GLY616 2.4 73.1 1.0 CB A:CYS612 2.4 1.4 1.0 CB A:CYS615 2.6 20.4 1.0 SG A:CYS556 2.7 50.2 1.0 N A:CYS615 2.9 21.3 1.0 HB2 A:CYS612 3.0 2.4 1.0 CA A:CYS615 3.1 60.2 1.0 HB2 A:ASN614 3.2 72.3 1.0 N A:GLY616 3.3 21.1 1.0 H A:GLU617 3.4 33.4 1.0 HB3 A:CYS615 3.6 42.5 1.0 CB A:CYS556 3.7 74.0 1.0 HB3 A:CYS556 3.7 61.1 1.0 CA A:CYS612 3.7 53.2 1.0 HB2 A:CYS556 3.7 75.5 1.0 C A:CYS615 3.8 1.4 1.0 O A:CYS612 3.8 12.2 1.0 H A:CYS559 3.8 13.4 1.0 HB2 A:ASN558 3.9 1.2 1.0 HB3 A:GLU617 3.9 41.5 1.0 C A:CYS612 3.9 52.2 1.0 C A:ASN614 3.9 4.1 1.0 CB A:CYS559 4.0 72.2 1.0 H A:ASN614 4.1 64.0 1.0 N A:GLU617 4.1 22.4 1.0 HA A:CYS615 4.1 72.3 1.0 HB2 A:CYS559 4.1 34.3 1.0 CB A:ASN614 4.1 43.2 1.0 HB2 A:GLU617 4.2 53.4 1.0 HE1 A:TRP619 4.2 20.5 1.0 N A:ASN614 4.4 74.2 1.0 HZ2 A:TRP619 4.4 75.4 1.0 CA A:ASN614 4.4 25.4 1.0 HA A:CYS612 4.4 12.4 1.0 H A:CYS612 4.5 14.4 1.0 HB3 A:ASN558 4.5 74.4 1.0 CA A:GLY616 4.5 74.1 1.0 CB A:GLU617 4.5 54.0 1.0 N A:CYS559 4.5 2.4 1.0 HB3 A:ASN614 4.6 43.4 1.0 N A:CYS612 4.6 60.1 1.0 HB3 A:CYS559 4.7 64.4 1.0 C A:GLY616 4.7 63.5 1.0 CB A:ASN558 4.7 10.2 1.0 N A:ARG613 4.8 23.2 1.0 CA A:GLU617 4.8 64.5 1.0 HA2 A:GLY616 4.9 71.1 1.0 O A:ASN614 4.9 34.1 1.0 CA A:CYS559 4.9 65.0 1.0 NE1 A:TRP619 4.9 61.5 1.0 HD21 A:ASN614 4.9 44.5 1.0 HD21 A:ASN558 5.0 20.3 1.0 O A:CYS615 5.0 13.2 1.0

K.Takahasi, H.Kumeta, N.Tsuduki, R.Narita, T.Shigemoto, R.Hirai, M.Yoneyama, M.Horiuchi, K.Ogura, T.Fujita, F.Inagaki. Solution Structures of Cytosolic Rna Sensor MDA5 and LGP2 C-Terminal Domains: Identification of the Rna Recognition Loop in Rig-I-Like Receptors J.Biol.Chem. V. 284 17465 2009.
ISSN: ISSN 0021-9258
PubMed: 19380577
DOI: 10.1074/JBC.M109.007179