Zinc in PDB 2r2z: The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583

The structure of The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583, PDB code: 2r2z was solved by R.Zhang, K.Tan, M.Zhou, M.Bargassa, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.75 / 1.20
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	39.494, 39.494, 101.258, 90.00, 90.00, 120.00
R / Rfree (%)	15.4 / 17.1

The binding sites of Zinc atom in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583 (pdb code 2r2z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583, PDB code: 2r2z:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn91 b:16.8 occ:0.86 OE1 A:GLU56 2.0 15.5 0.9 CD A:GLU56 2.7 15.0 1.0 OE2 A:GLU56 2.9 12.9 0.9 O A:HOH196 4.0 30.6 1.0 O A:HOH136 4.1 22.0 1.0 O A:HOH216 4.1 19.0 1.0 O A:HOH111 4.2 17.5 1.0 CG A:GLU56 4.2 14.4 1.0 CB A:GLU56 4.7 11.6 1.0

Zinc binding site 2 out of 4 in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn92 b:15.9 occ:0.55 O A:HOH215 2.0 29.0 1.0 OE2 A:GLU58 2.1 18.1 0.8 O A:HOH203 2.2 30.4 1.0 CD A:GLU58 3.0 17.6 1.0 OE1 A:GLU58 3.2 14.1 0.8 O A:HOH163 3.7 36.0 1.0 O A:HOH130 4.0 20.1 1.0 O A:HOH224 4.3 46.9 1.0 O A:HOH187 4.3 25.5 1.0 O A:HOH158 4.3 28.3 1.0 CG A:GLU58 4.4 15.6 1.0

Zinc binding site 3 out of 4 in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn93 b:11.2 occ:0.40 O A:HOH216 1.9 19.0 1.0 O A:HOH174 2.1 20.9 1.0 OD1 A:ASP55 2.1 14.2 0.6 O A:HOH139 2.3 20.8 1.0 O A:HOH136 2.3 22.0 1.0 CG A:ASP55 3.0 15.5 1.0 OD2 A:ASP55 3.3 13.6 0.6 O A:HOH146 4.0 22.4 1.0 O A:GLU56 4.3 13.5 1.0 N A:GLU56 4.4 13.6 1.0 CB A:ASP55 4.5 15.1 1.0 CB A:GLU56 4.7 11.6 1.0 O A:HOH204 4.8 28.7 1.0 OE1 A:GLU56 4.9 15.5 0.9 O A:HOH114 4.9 21.8 1.0 CA A:GLU56 5.0 12.2 1.0

Zinc binding site 4 out of 4 in the The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn94 b:19.0 occ:0.25 O A:HOH217 1.8 17.9 1.0 O A:HOH218 1.9 27.2 1.0 O A:HOH229 1.9 11.4 1.0 NE2 A:HIS85 2.0 12.9 0.5 OE1 A:GLU14 2.5 20.4 1.0 OE2 A:GLU14 2.6 16.8 1.0 CD A:GLU14 2.7 16.1 1.0 CD2 A:HIS85 2.8 11.8 0.5 CE1 A:HIS85 3.0 9.5 0.5 CD2 A:HIS85 3.6 12.4 0.5 O A:HOH166 3.6 23.6 1.0 CG A:HIS85 4.0 10.9 0.5 CG A:GLU14 4.0 12.3 1.0 ND1 A:HIS85 4.0 11.1 0.5 NE2 A:HIS85 4.3 13.3 0.5 O A:HOH221 4.3 45.3 1.0 NH1 A:ARG83 4.6 11.1 1.0 CG A:HIS85 4.6 11.6 0.5 O A:HOH131 4.7 22.9 1.0 CD A:ARG83 4.8 10.7 1.0 CB A:GLU14 4.8 9.4 1.0

R.Zhang, K.Tan, M.Zhou, M.Bargassa, A.Joachimiak. The Crystal Structure of A Hemolysin Domain From Enterococcus Faecalis V583. To Be Published.