Atomistry » Zinc » PDB 2qyn-2rgl » 2r1x
Atomistry »
  Zinc »
    PDB 2qyn-2rgl »
      2r1x »

Zinc in PDB 2r1x: Crystal Structure of S25-2 Fab in Complex with Kdo Analogues

Protein crystallography data

The structure of Crystal Structure of S25-2 Fab in Complex with Kdo Analogues, PDB code: 2r1x was solved by C.L.Brooks, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.940, 81.490, 131.420, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 23.9

Other elements in 2r1x:

The structure of Crystal Structure of S25-2 Fab in Complex with Kdo Analogues also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of S25-2 Fab in Complex with Kdo Analogues (pdb code 2r1x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of S25-2 Fab in Complex with Kdo Analogues, PDB code: 2r1x:

Zinc binding site 1 out of 1 in 2r1x

Go back to Zinc Binding Sites List in 2r1x
Zinc binding site 1 out of 1 in the Crystal Structure of S25-2 Fab in Complex with Kdo Analogues


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S25-2 Fab in Complex with Kdo Analogues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn215

b:16.9
occ:1.00
OE2 A:GLU184 2.0 13.9 1.0
NE2 A:HIS188 2.0 16.9 1.0
CD A:GLU184 2.8 14.6 1.0
CD2 A:HIS188 3.0 15.2 1.0
CE1 A:HIS188 3.0 14.6 1.0
OE1 A:GLU184 3.1 14.5 1.0
O A:HOH364 4.0 23.5 1.0
ND1 A:HIS188 4.1 16.7 1.0
CG A:HIS188 4.1 16.0 1.0
O A:HOH411 4.2 27.9 1.0
CG A:GLU184 4.2 14.0 1.0
CB A:ARG187 4.4 13.3 1.0
CD A:ARG187 4.6 14.9 1.0
O A:GLU184 4.8 14.8 1.0

Reference:

C.L.Brooks, S.Muller-Loennies, L.Brade, P.Kosma, T.Hirama, C.R.Mackenzie, H.Brade, S.V.Evans. Exploration of Specificity in Germline Monoclonal Antibody Recognition of A Range of Natural and Synthetic Epitopes. J.Mol.Biol. V. 377 450 2008.
ISSN: ISSN 0022-2836
PubMed: 18272175
DOI: 10.1016/J.JMB.2008.01.018
Page generated: Wed Dec 16 03:51:23 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy