Atomistry » Zinc » PDB 2qla-2qym » 2qym
Atomistry »
  Zinc »
    PDB 2qla-2qym »
      2qym »

Zinc in PDB 2qym: Crystal Structure of Unliganded PDE4C2

Protein crystallography data

The structure of Crystal Structure of Unliganded PDE4C2, PDB code: 2qym was solved by H.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 74.738, 74.738, 275.910, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 22.9

Other elements in 2qym:

The structure of Crystal Structure of Unliganded PDE4C2 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Unliganded PDE4C2 (pdb code 2qym). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Unliganded PDE4C2, PDB code: 2qym:

Zinc binding site 1 out of 1 in 2qym

Go back to Zinc Binding Sites List in 2qym
Zinc binding site 1 out of 1 in the Crystal Structure of Unliganded PDE4C2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Unliganded PDE4C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:25.2
occ:1.00
OD2 A:ASP323 2.1 20.9 1.0
OD1 A:ASP440 2.1 21.2 1.0
O A:HOH558 2.1 20.9 1.0
NE2 A:HIS322 2.1 20.2 1.0
NE2 A:HIS286 2.1 20.5 1.0
O A:HOH559 2.3 21.9 1.0
CD2 A:HIS322 3.0 19.8 1.0
CG A:ASP440 3.0 22.3 1.0
CD2 A:HIS286 3.1 20.9 1.0
CG A:ASP323 3.1 20.8 1.0
CE1 A:HIS286 3.1 20.1 1.0
CE1 A:HIS322 3.2 20.0 1.0
OD2 A:ASP440 3.4 23.8 1.0
OD1 A:ASP323 3.6 21.5 1.0
MG A:MG2 3.7 24.3 1.0
O A:HOH560 4.1 17.7 1.0
CD2 A:HIS282 4.1 20.9 1.0
CG A:HIS322 4.2 20.2 1.0
O A:HOH573 4.2 23.1 1.0
ND1 A:HIS322 4.2 19.0 1.0
ND1 A:HIS286 4.2 19.8 1.0
CG A:HIS286 4.2 21.1 1.0
NE2 A:HIS282 4.3 20.8 1.0
CB A:ASP323 4.3 20.3 1.0
CB A:ASP440 4.3 21.5 1.0
CG2 A:VAL290 4.7 19.8 1.0
O A:HOH563 4.7 18.9 1.0
CA A:ASP440 5.0 21.1 1.0

Reference:

H.Wang, M.S.Peng, Y.Chen, J.Geng, H.Robinson, M.D.Houslay, J.Cai, H.Ke. Structures of the Four Subfamilies of Phosphodiesterase-4 Provide Insight Into the Selectivity of Their Inhibitors. Biochem.J. V. 408 193 2007.
ISSN: ISSN 0264-6021
PubMed: 17727341
DOI: 10.1042/BJ20070970
Page generated: Wed Dec 16 03:51:14 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy