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Zinc in PDB 2qsw: Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis

Protein crystallography data

The structure of Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis, PDB code: 2qsw was solved by J.Osipiuk, L.Bigelow, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.80 / 1.50
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 38.896, 38.896, 111.938, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 18.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis (pdb code 2qsw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis, PDB code: 2qsw:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2qsw

Go back to Zinc Binding Sites List in 2qsw
Zinc binding site 1 out of 3 in the Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:14.6
occ:1.00
ND1 A:HIS276 1.9 13.3 1.0
OE2 A:GLU278 1.9 14.4 1.0
OE1 A:GLU338 2.0 16.6 1.0
O A:HOH66 2.1 13.5 1.0
CD A:GLU338 2.7 15.7 1.0
CD A:GLU278 2.7 12.8 1.0
OE1 A:GLU278 2.8 14.7 1.0
OE2 A:GLU338 2.8 15.2 1.0
CE1 A:HIS276 2.8 13.2 1.0
CG A:HIS276 3.1 15.0 1.0
CB A:HIS276 3.5 14.1 1.0
N A:HIS276 3.7 13.2 1.0
O A:ARG336 3.7 14.7 1.0
O A:LEU274 3.9 13.3 1.0
O A:HOH43 3.9 24.2 1.0
NE2 A:HIS276 4.0 15.1 1.0
CD2 A:HIS276 4.1 14.0 1.0
CG A:GLU278 4.2 13.2 1.0
CG A:GLU338 4.2 14.0 1.0
CA A:HIS276 4.2 13.7 1.0
C A:LEU274 4.4 13.4 1.0
C A:PHE275 4.5 12.9 1.0
N A:GLU338 4.5 12.8 1.0
CA A:PHE275 4.6 13.2 1.0
C A:ARG336 4.7 13.1 1.0
N A:PHE275 4.8 12.5 1.0
CB A:GLU338 4.8 13.4 1.0
CB A:LEU274 4.9 14.1 1.0

Zinc binding site 2 out of 3 in 2qsw

Go back to Zinc Binding Sites List in 2qsw
Zinc binding site 2 out of 3 in the Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:16.9
occ:1.00
OE1 A:GLU291 1.9 18.4 1.0
NE2 A:HIS287 2.0 13.5 1.0
CD A:GLU291 2.9 16.0 1.0
CE1 A:HIS287 3.0 15.8 1.0
CD2 A:HIS287 3.0 12.9 1.0
OE2 A:GLU291 3.2 19.0 1.0
O A:HOH98 3.7 53.4 1.0
ND1 A:HIS287 4.1 16.4 1.0
CG A:HIS287 4.1 13.0 1.0
CG A:GLU291 4.3 15.2 1.0
CB A:GLU291 4.6 13.1 1.0
OH A:TYR292 4.9 15.9 1.0
CD1 A:LEU335 4.9 17.3 1.0

Zinc binding site 3 out of 3 in 2qsw

Go back to Zinc Binding Sites List in 2qsw
Zinc binding site 3 out of 3 in the Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of C-Terminal Domain of Abc Transporter / Atp- Binding Protein From Enterococcus Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:13.9
occ:0.30
OE2 A:GLU340 1.7 27.9 1.0
OE1 A:GLU345 2.1 33.8 1.0
CD A:GLU340 2.5 23.6 1.0
OE1 A:GLU340 2.7 26.9 1.0
CD A:GLU345 3.0 30.6 1.0
OE2 A:GLU345 3.2 35.4 1.0
NH2 A:ARG272 3.7 31.6 1.0
O A:HOH84 3.7 41.0 1.0
CG A:GLU340 4.0 19.3 1.0
NH1 A:ARG272 4.1 33.1 1.0
O A:HOH4 4.2 17.7 1.0
CZ A:ARG272 4.4 31.2 1.0
CG A:GLU345 4.4 28.8 1.0
CB A:GLU340 5.0 19.6 1.0

Reference:

J.Osipiuk, L.Bigelow, S.Clancy, A.Joachimiak. X-Ray Structure of C-Terminal Domain of Abc Transporter / Atp-Binding Protein From Enterococcus Faecalis. To Be Published.
Page generated: Thu Oct 17 03:35:11 2024

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