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Zinc in PDB 2qgs: Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89

Protein crystallography data

The structure of Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89, PDB code: 2qgs was solved by F.Forouhar, M.Su, J.Benach, J.Seetharaman, C.X.Chen, Y.Fang, K.Cunningham, L.Owen, L.-C.Ma, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.56 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.736, 62.843, 71.828, 90.00, 107.67, 90.00
R / Rfree (%) 20.8 / 24.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89 (pdb code 2qgs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89, PDB code: 2qgs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2qgs

Go back to Zinc Binding Sites List in 2qgs
Zinc binding site 1 out of 2 in the Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:23.2
occ:1.00
OD1 A:ASP123 2.2 13.1 1.0
NE2 A:HIS29 2.2 15.0 1.0
O A:HOH305 2.3 16.6 1.0
NE2 A:HIS59 2.3 17.3 1.0
O A:HOH306 2.4 17.5 1.0
O A:HOH307 2.6 27.2 1.0
CE1 A:HIS29 3.1 16.7 1.0
CD2 A:HIS59 3.1 15.5 1.0
CG A:ASP123 3.2 14.2 1.0
CD2 A:HIS29 3.3 13.6 1.0
CE1 A:HIS59 3.5 15.4 1.0
OD2 A:ASP123 3.5 19.1 1.0
ND1 A:HIS29 4.2 15.5 1.0
CG A:HIS59 4.3 15.5 1.0
CG A:HIS29 4.4 15.4 1.0
OD2 A:ASP60 4.4 24.8 1.0
CB A:ASP123 4.4 11.9 1.0
ND1 A:HIS59 4.5 14.2 1.0
O A:HOH386 4.5 39.5 1.0
CG2 A:VAL33 4.6 5.7 1.0
O A:HOH321 4.6 23.7 1.0
O A:HOH308 4.6 18.8 1.0
CB A:ASP60 4.9 18.4 1.0

Zinc binding site 2 out of 2 in 2qgs

Go back to Zinc Binding Sites List in 2qgs
Zinc binding site 2 out of 2 in the Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target SER89 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:42.4
occ:0.50
OD1 B:ASP123 2.4 23.3 1.0
NE2 B:HIS29 2.5 19.3 1.0
NE2 B:HIS59 2.5 34.4 1.0
CD2 B:HIS59 3.4 34.1 1.0
CE1 B:HIS29 3.4 19.7 1.0
CG B:ASP123 3.4 23.8 1.0
CD2 B:HIS29 3.4 17.1 1.0
CE1 B:HIS59 3.5 36.1 1.0
O B:HOH429 3.9 55.6 1.0
CE B:MSE100 4.1 52.9 1.0
OD2 B:ASP123 4.1 27.6 1.0
CG2 B:VAL33 4.3 16.9 1.0
CB B:ASP123 4.3 20.4 1.0
ND1 B:HIS29 4.5 19.5 1.0
CG B:HIS59 4.6 34.0 1.0
CG B:HIS29 4.6 19.7 1.0
ND1 B:HIS59 4.6 34.8 1.0
O B:HOH345 4.7 25.8 1.0

Reference:

F.Forouhar, M.Su, J.Benach, J.Seetharaman, C.X.Chen, Y.Fang, K.Cunningham, L.Owen, L.-C.Ma, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of SE1688 Protein From Staphylococcus Epidermidis. To Be Published.
Page generated: Thu Oct 17 03:27:28 2024

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