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Zinc in PDB 2q7s: Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution, PDB code: 2q7s was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.610, 74.835, 145.163, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution (pdb code 2q7s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution, PDB code: 2q7s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2q7s

Go back to Zinc Binding Sites List in 2q7s
Zinc binding site 1 out of 2 in the Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:27.2
occ:1.00
ND1 A:HIS171 2.0 19.4 1.0
OD2 A:ASP54 2.1 15.4 1.0
ND1 A:HIS31 2.1 15.5 1.0
CG A:ASP54 2.9 18.4 1.0
CE1 A:HIS171 3.0 25.0 1.0
CG A:HIS171 3.0 19.5 1.0
CE1 A:HIS31 3.0 19.0 1.0
OD1 A:ASP54 3.2 12.4 1.0
CG A:HIS31 3.2 15.9 1.0
CB A:HIS171 3.3 14.4 1.0
CB A:HIS31 3.6 15.0 1.0
CA A:HIS171 4.1 14.4 1.0
NE2 A:HIS171 4.1 18.8 1.0
CD2 A:HIS171 4.1 17.2 1.0
NE2 A:HIS31 4.2 12.8 1.0
CB A:ASP54 4.2 4.8 1.0
CD2 A:HIS31 4.3 10.8 1.0
O A:SER172 4.3 21.5 1.0
NH2 A:ARG78 4.4 30.8 1.0
NH1 A:ARG78 4.5 40.8 1.0
N A:SER172 4.5 16.6 1.0
O A:HOH457 4.6 26.0 1.0
CZ A:ARG78 4.7 30.4 1.0
OE2 A:GLU249 4.8 31.5 1.0
OE1 A:GLU249 4.8 31.4 1.0
O A:HOH405 4.8 18.4 1.0
C A:HIS171 4.9 14.7 1.0
O A:LEU170 5.0 15.1 1.0

Zinc binding site 2 out of 2 in 2q7s

Go back to Zinc Binding Sites List in 2q7s
Zinc binding site 2 out of 2 in the Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of N-Formylglutamate Amidohydrolase (YP_297560.1) From Ralstonia Eutropha JMP134 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:25.3
occ:1.00
ND1 B:HIS171 2.1 18.8 1.0
OD2 B:ASP54 2.2 10.6 1.0
ND1 B:HIS31 2.2 11.9 1.0
CG B:ASP54 3.0 20.3 1.0
CE1 B:HIS31 3.0 14.8 1.0
CE1 B:HIS171 3.0 19.3 1.0
CG B:HIS171 3.1 21.8 1.0
OD1 B:ASP54 3.1 15.4 1.0
CG B:HIS31 3.2 10.0 1.0
CB B:HIS171 3.4 13.7 1.0
CB B:HIS31 3.6 14.0 1.0
NH2 B:ARG78 4.0 43.4 1.0
NE2 B:HIS171 4.2 18.0 1.0
NE2 B:HIS31 4.2 17.1 1.0
CA B:HIS171 4.2 15.9 1.0
CD2 B:HIS171 4.2 23.1 1.0
O B:SER172 4.2 26.1 1.0
CD2 B:HIS31 4.3 10.8 1.0
CB B:ASP54 4.3 9.1 1.0
N B:SER172 4.6 19.6 1.0
O B:HOH424 4.6 23.4 1.0
CZ B:ARG78 4.6 31.9 1.0
OE1 B:GLU249 4.7 28.9 1.0
O B:HOH403 4.8 16.8 1.0
OE2 B:GLU249 4.9 34.5 1.0
C B:HIS171 5.0 17.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 03:50:00 2020

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