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Zinc in PDB 2ooi: The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315

Protein crystallography data

The structure of The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315, PDB code: 2ooi was solved by R.Zhang, E.Duggan, M.Gu, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.17 / 2.60
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 116.104, 116.104, 86.185, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 27

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315 (pdb code 2ooi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315, PDB code: 2ooi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ooi

Go back to Zinc Binding Sites List in 2ooi
Zinc binding site 1 out of 2 in the The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:83.2
occ:1.00
NH2 A:ARG128 3.4 63.5 1.0
OG A:SER84 3.4 96.3 1.0
N A:ILE159 3.6 54.2 1.0
NH2 A:ARG126 3.7 55.8 1.0
CA A:GLY82 3.9 93.2 1.0
N A:PHE160 4.1 55.0 1.0
NH1 A:ARG126 4.2 57.5 1.0
CA A:SER158 4.2 54.5 1.0
CZ A:ARG128 4.2 62.7 1.0
NH1 A:ARG128 4.3 62.2 1.0
CB A:ILE159 4.3 54.0 1.0
N A:PHE83 4.3 94.2 1.0
C A:SER158 4.3 54.3 1.0
OG A:SER158 4.3 53.7 1.0
CB A:SER84 4.4 96.4 1.0
CZ A:ARG126 4.4 56.3 1.0
CA A:ILE159 4.4 54.4 1.0
C A:GLY82 4.5 93.5 1.0
N A:SER84 4.6 95.8 1.0
CB A:PHE160 4.6 56.7 1.0
CB A:SER158 4.7 54.2 1.0
CG1 A:ILE159 4.8 54.3 1.0
C A:ILE159 4.8 54.8 1.0
O A:GLY157 4.9 56.5 1.0

Zinc binding site 2 out of 2 in 2ooi

Go back to Zinc Binding Sites List in 2ooi
Zinc binding site 2 out of 2 in the The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2

b:93.4
occ:1.00
CD2 B:PHE160 3.4 60.2 1.0
NH1 B:ARG126 3.5 52.5 1.0
N B:ILE159 3.5 53.8 1.0
NH1 B:ARG128 3.7 62.3 1.0
OG B:SER84 3.9 90.5 1.0
N B:PHE160 4.0 54.7 1.0
CA B:SER158 4.0 54.2 1.0
CA B:GLY82 4.0 90.2 1.0
OG B:SER158 4.0 53.9 1.0
CE2 B:PHE160 4.1 60.6 1.0
NH2 B:ARG128 4.1 62.3 1.0
C B:SER158 4.2 53.8 1.0
N B:PHE83 4.3 90.5 1.0
CZ B:ARG128 4.4 60.4 1.0
CG B:PHE160 4.4 59.2 1.0
CB B:ILE159 4.4 53.9 1.0
CA B:ILE159 4.4 54.1 1.0
CB B:SER158 4.5 54.0 1.0
C B:GLY82 4.5 90.2 1.0
CB B:PHE160 4.5 56.9 1.0
CZ B:ARG126 4.6 52.4 1.0
N B:SER84 4.7 91.3 1.0
C B:ILE159 4.7 54.3 1.0
NH2 B:ARG126 4.8 53.1 1.0
CB B:SER84 4.8 91.4 1.0
O B:GLY157 4.8 55.3 1.0
CA B:PHE160 4.9 55.5 1.0
CG1 B:ILE159 4.9 52.9 1.0

Reference:

R.Zhang, E.Duggan, M.Gu, A.Joachimiak. The Crystal Structure of Gene Product SA0254 From Staphylocococcus Aureus Subsp. Aureus N315 To Be Published.
Page generated: Thu Oct 17 02:42:24 2024

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