Zinc in PDB 2ood: Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum

All present enzymatic activity of Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum:
3.5.4.3;

The structure of Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum, PDB code: 2ood was solved by R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.09 / 2.62
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	193.216, 193.216, 121.540, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 22.2

The binding sites of Zinc atom in the Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum (pdb code 2ood). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum, PDB code: 2ood:

Zinc binding site 1 out of 1 in the Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:33.0 occ:1.00 N2 A:GUN600 2.0 54.4 1.0 NE2 A:HIS81 2.1 36.2 1.0 NE2 A:HIS79 2.2 30.8 1.0 NE2 A:HIS234 2.2 37.7 1.0 OD1 A:ASP326 2.5 41.1 1.0 O A:HOH688 2.6 45.5 1.0 C2 A:GUN600 2.8 59.2 1.0 N3 A:GUN600 2.8 60.6 1.0 CD2 A:HIS234 3.0 37.8 1.0 CD2 A:HIS81 3.0 36.3 1.0 CD2 A:HIS79 3.0 31.1 1.0 CE1 A:HIS81 3.2 36.5 1.0 CE1 A:HIS79 3.3 31.6 1.0 CE1 A:HIS234 3.3 37.5 1.0 CG A:ASP326 3.6 40.1 1.0 CE1 A:HIS273 3.9 31.9 1.0 OD2 A:ASP326 3.9 40.8 1.0 N1 A:GUN600 4.1 60.9 1.0 C4 A:GUN600 4.1 63.1 1.0 CG A:HIS81 4.2 36.0 1.0 CG A:HIS234 4.2 37.4 1.0 CG A:HIS79 4.2 31.4 1.0 ND1 A:HIS81 4.2 36.4 1.0 ND1 A:HIS234 4.3 38.8 1.0 ND1 A:HIS79 4.3 33.8 1.0 CE2 A:PHE138 4.4 37.9 1.0 O A:HOH793 4.4 46.6 1.0 CD2 A:PHE138 4.4 38.2 1.0 O A:HOH632 4.6 49.0 1.0 ND1 A:HIS273 4.7 32.2 1.0 O A:HOH730 4.7 35.9 1.0 NE2 A:HIS273 4.8 32.0 1.0 CB A:ASP326 4.8 36.2 1.0 CZ A:PHE138 5.0 38.4 1.0 N9 A:GUN600 5.0 63.3 1.0

R.Agarwal, S.K.Burley, S.Swaminathan. Crystal Structure of Guanine Deaminase From Bradyrhizobium Japonicum To Be Published.