Zinc in PDB 2oo4: Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2

The structure of Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2, PDB code: 2oo4 was solved by W.R.Gordon, D.Vardar-Ulu, G.Histen, C.Sanchez-Irizarry, J.C.Aster, S.C.Blacklow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.372, 74.706, 139.412, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 26.8

The structure of Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2 also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Zinc atom in the Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2 (pdb code 2oo4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2, PDB code: 2oo4:

Zinc binding site 1 out of 1 in the Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Lnr-Hd (Negative Regulatory Region) From Human Notch 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6001 b:51.6 occ:1.00 OE2 A:GLU1525 1.7 47.0 1.0 NE2 A:HIS1638 2.0 37.4 1.0 ND1 A:HIS1574 2.2 31.9 1.0 O A:HOH42 2.4 38.2 1.0 CD A:GLU1525 2.7 44.6 1.0 CE1 A:HIS1638 2.9 40.7 1.0 CD2 A:HIS1638 3.1 37.5 1.0 CG A:HIS1574 3.2 30.8 1.0 CE1 A:HIS1574 3.2 33.3 1.0 OE1 A:GLU1525 3.3 45.7 1.0 CB A:HIS1574 3.4 31.0 1.0 O A:HOH14 3.9 33.5 1.0 CG A:GLU1525 3.9 40.4 1.0 ND1 A:HIS1638 4.0 40.9 1.0 CG A:HIS1638 4.2 38.0 1.0 NE2 A:HIS1574 4.3 30.3 1.0 CD2 A:HIS1574 4.3 30.4 1.0 CD A:GLN1497 4.4 59.5 1.0 OE1 A:GLN1497 4.5 61.4 1.0 CG A:GLN1497 4.5 58.4 1.0 OG A:SER1636 4.5 36.1 1.0 CD2 A:PHE1494 4.8 44.7 1.0 O A:HOH101 4.8 56.7 1.0 CA A:HIS1574 4.8 30.1 1.0 CE2 A:PHE1494 4.9 44.0 1.0 NE2 A:GLN1497 5.0 59.4 1.0

W.R.Gordon, D.Vardar-Ulu, G.Histen, C.Sanchez-Irizarry, J.C.Aster, S.C.Blacklow. Structural Basis For Autoinhibition of Notch Nat.Struct.Mol.Biol. V. 14 295 2007.
ISSN: ISSN 1545-9993
PubMed: 17401372
DOI: 10.1038/NSMB1227