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Zinc in PDB 2oik: Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution, PDB code: 2oik was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.55 / 1.65
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.243, 47.981, 69.766, 108.13, 98.22, 90.34
R / Rfree (%) 17.9 / 22.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution (pdb code 2oik). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution, PDB code: 2oik:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2oik

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Zinc binding site 1 out of 4 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:11.4
occ:1.00
ND1 A:HIS49 2.0 13.2 1.0
ND1 A:HIS95 2.1 11.0 1.0
SG A:CYS11 2.1 11.8 1.0
SG A:CYS14 2.3 11.9 1.0
CE1 A:HIS49 2.9 17.4 1.0
CB A:CYS11 3.1 16.2 1.0
CE1 A:HIS95 3.1 13.4 1.0
CG A:HIS95 3.1 11.8 1.0
CG A:HIS49 3.1 15.1 1.0
CB A:HIS95 3.4 9.5 1.0
CB A:CYS14 3.5 11.9 1.0
CB A:HIS49 3.6 13.9 1.0
N A:CYS14 3.6 10.2 1.0
CA A:CYS14 4.0 12.2 1.0
NE2 A:HIS49 4.1 15.8 1.0
CA A:HIS49 4.1 13.2 1.0
C A:LEU13 4.2 9.8 1.0
CD2 A:HIS49 4.2 18.2 1.0
NE2 A:HIS95 4.2 10.1 1.0
CD2 A:HIS95 4.2 9.1 1.0
CA A:CYS11 4.5 14.6 1.0
CB A:LEU13 4.6 9.4 1.0
O A:CYS11 4.6 12.8 1.0
O A:LEU13 4.7 13.7 1.0
CA A:HIS95 4.7 9.5 1.0
CA A:LEU13 4.7 10.4 1.0
C A:CYS11 4.7 15.0 1.0
N A:LEU13 4.8 9.9 1.0
CB A:HIS8 4.8 30.8 1.0
O A:HOH315 4.9 28.7 1.0
N A:HIS8 4.9 33.4 1.0
N A:HIS49 4.9 15.6 1.0

Zinc binding site 2 out of 4 in 2oik

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Zinc binding site 2 out of 4 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:13.0
occ:1.00
ND1 B:HIS49 2.1 11.1 1.0
ND1 B:HIS95 2.1 11.2 1.0
SG B:CYS11 2.3 10.9 1.0
SG B:CYS14 2.3 11.0 1.0
CE1 B:HIS95 3.0 4.6 1.0
CE1 B:HIS49 3.0 17.4 1.0
CG B:HIS49 3.1 10.8 1.0
CB B:CYS11 3.2 16.1 1.0
CG B:HIS95 3.2 9.3 1.0
CB B:HIS49 3.5 13.0 1.0
CB B:CYS14 3.5 14.0 1.0
CB B:HIS95 3.5 6.9 1.0
N B:CYS14 3.6 7.7 1.0
CA B:CYS14 4.0 13.8 1.0
CA B:HIS49 4.1 13.0 1.0
C B:LEU13 4.1 11.0 1.0
NE2 B:HIS95 4.2 2.0 1.0
NE2 B:HIS49 4.2 11.6 1.0
CD2 B:HIS49 4.2 18.8 1.0
CD2 B:HIS95 4.3 2.7 1.0
CA B:CYS11 4.6 14.1 1.0
CB B:HIS8 4.6 29.3 1.0
O B:HOH277 4.7 33.6 1.0
CB B:LEU13 4.7 12.5 1.0
O B:LEU13 4.7 13.0 1.0
CA B:LEU13 4.7 10.7 1.0
CA B:HIS95 4.7 9.4 1.0
O B:HOH282 4.8 35.9 1.0
N B:HIS49 4.8 11.7 1.0
N B:LEU13 4.8 10.0 1.0
C B:CYS11 4.8 12.7 1.0
O B:CYS11 4.8 11.6 1.0
N B:HIS8 4.9 32.5 1.0
O B:HIS8 4.9 27.4 1.0

Zinc binding site 3 out of 4 in 2oik

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Zinc binding site 3 out of 4 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:12.1
occ:1.00
ND1 C:HIS49 2.1 12.9 1.0
ND1 C:HIS95 2.1 10.5 1.0
SG C:CYS11 2.3 10.2 1.0
SG C:CYS14 2.3 9.7 1.0
CE1 C:HIS49 3.0 18.6 1.0
CE1 C:HIS95 3.0 6.6 1.0
CB C:CYS11 3.1 14.7 1.0
CG C:HIS95 3.1 9.1 1.0
CG C:HIS49 3.1 12.3 1.0
CB C:CYS14 3.5 12.0 1.0
CB C:HIS95 3.5 10.3 1.0
CB C:HIS49 3.5 14.4 1.0
N C:CYS14 3.5 10.8 1.0
CA C:CYS14 3.9 12.2 1.0
CA C:HIS49 4.0 12.9 1.0
C C:LEU13 4.1 10.5 1.0
NE2 C:HIS49 4.1 16.9 1.0
NE2 C:HIS95 4.1 6.3 1.0
CD2 C:HIS49 4.2 13.3 1.0
CD2 C:HIS95 4.2 3.5 1.0
CA C:CYS11 4.5 14.8 1.0
CB C:LEU13 4.6 11.4 1.0
O C:HOH285 4.6 34.8 1.0
CB C:HIS8 4.6 30.1 1.0
O C:LEU13 4.7 13.2 1.0
CA C:LEU13 4.7 12.1 1.0
O C:CYS11 4.7 13.1 1.0
CA C:HIS95 4.7 10.2 1.0
N C:LEU13 4.7 12.3 1.0
N C:HIS49 4.8 13.1 1.0
C C:CYS11 4.8 12.3 1.0
N C:HIS8 4.9 32.8 1.0

Zinc binding site 4 out of 4 in 2oik

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Zinc binding site 4 out of 4 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:12.4
occ:1.00
ND1 D:HIS49 1.9 11.3 1.0
ND1 D:HIS95 2.1 10.9 1.0
SG D:CYS11 2.3 12.9 1.0
SG D:CYS14 2.3 11.7 1.0
CE1 D:HIS49 2.8 18.1 1.0
CE1 D:HIS95 3.0 13.5 1.0
CG D:HIS49 3.1 16.6 1.0
CB D:CYS11 3.1 13.9 1.0
CG D:HIS95 3.2 11.2 1.0
CB D:CYS14 3.4 12.5 1.0
CB D:HIS95 3.5 10.1 1.0
N D:CYS14 3.5 12.8 1.0
CB D:HIS49 3.6 13.0 1.0
CA D:CYS14 3.9 11.5 1.0
NE2 D:HIS49 3.9 14.1 1.0
C D:LEU13 4.1 12.2 1.0
CA D:HIS49 4.1 14.9 1.0
CD2 D:HIS49 4.1 14.2 1.0
NE2 D:HIS95 4.1 8.0 1.0
CD2 D:HIS95 4.2 7.7 1.0
CA D:CYS11 4.5 14.4 1.0
CB D:LEU13 4.6 10.6 1.0
CA D:LEU13 4.7 13.0 1.0
O D:LEU13 4.7 11.5 1.0
CB D:HIS8 4.7 32.2 1.0
O D:CYS11 4.7 14.5 1.0
N D:LEU13 4.7 11.4 1.0
C D:CYS11 4.8 12.9 1.0
CA D:HIS95 4.8 10.2 1.0
N D:HIS49 4.8 14.3 1.0
N D:HIS8 4.9 34.5 1.0
O D:HIS8 5.0 26.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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