Atomistry » Zinc » PDB 2o6m-2om1 » 2oba
Atomistry »
  Zinc »
    PDB 2o6m-2om1 »
      2oba »

Zinc in PDB 2oba: Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase

Enzymatic activity of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase

All present enzymatic activity of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase:
4.2.3.12;

Protein crystallography data

The structure of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase, PDB code: 2oba was solved by T.E.Mcgrath, G.Kisselman, K.Battaile, V.Romanov, J.Wu-Brown, J.Guthrie, C.Virag, K.Mansoury, A.M.Edwards, E.F.Pai, N.Y.Chirgadze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.22 / 2.33
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.082, 87.521, 124.670, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase (pdb code 2oba). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase, PDB code: 2oba:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 1 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:37.8
occ:1.00
 O A:HOH262 2.1 37.2 1.0
OE2 A:GLU107 2.1 52.5 1.0
NE2 A:HIS30 2.2 39.4 1.0
NE2 A:HIS28 2.4 42.1 1.0
NE2 A:HIS13 2.4 47.4 1.0
O A:HOH257 2.5 33.4 1.0
CE1 A:HIS30 3.1 36.2 1.0
CD2 A:HIS28 3.2 39.5 1.0
CD2 A:HIS30 3.2 38.4 1.0
CD A:GLU107 3.2 51.7 1.0
CE1 A:HIS13 3.3 42.8 1.0
CD2 A:HIS13 3.5 45.8 1.0
CE1 A:HIS28 3.6 43.1 1.0
CG A:GLU107 3.8 48.0 1.0
O A:HOH214 4.1 40.0 1.0
OE1 A:GLU107 4.2 51.4 1.0
ND1 A:HIS30 4.3 38.1 1.0
NE2 D:HIS68 4.3 39.5 1.0
CG A:HIS30 4.3 39.1 1.0
CG A:HIS28 4.4 41.8 1.0
ND1 A:HIS13 4.5 44.6 1.0
O A:HOH261 4.5 47.8 1.0
ND1 A:HIS28 4.6 41.2 1.0
CG A:HIS13 4.6 43.9 1.0
CD2 D:HIS68 4.8 42.3 1.0

Zinc binding site 2 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 2 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn200

b:54.1
occ:1.00
 OE2 B:GLU107 2.1 53.3 1.0
NE2 B:HIS28 2.1 40.0 1.0
NE2 B:HIS30 2.3 37.9 1.0
NE2 B:HIS13 2.4 39.7 1.0
O F:HOH214 2.6 47.2 1.0
CE1 B:HIS28 3.1 37.6 1.0
CD2 B:HIS28 3.2 39.0 1.0
CD B:GLU107 3.2 50.6 1.0
CE1 B:HIS13 3.2 40.4 1.0
CE1 B:HIS30 3.2 37.7 1.0
CD2 B:HIS30 3.3 37.3 1.0
CD2 B:HIS13 3.4 40.3 1.0
CG B:GLU107 3.9 49.7 1.0
OE1 B:GLU107 4.1 56.6 1.0
ND1 B:HIS28 4.2 37.7 1.0
CG B:HIS28 4.3 37.9 1.0
ND1 B:HIS30 4.4 38.8 1.0
ND1 B:HIS13 4.4 40.9 1.0
CG B:HIS30 4.4 38.6 1.0
NE2 F:HIS68 4.5 37.0 1.0
CG B:HIS13 4.5 41.5 1.0
SG B:CYS24 4.5 51.4 1.0
CD2 F:HIS68 4.8 38.5 1.0

Zinc binding site 3 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 3 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn200

b:50.9
occ:1.00
 NE2 C:HIS30 2.2 39.5 1.0
NE2 C:HIS13 2.3 40.1 1.0
NE2 C:HIS28 2.3 35.0 1.0
OE1 C:GLU107 3.1 57.8 1.0
CE1 C:HIS13 3.1 39.7 1.0
CE1 C:HIS30 3.2 37.3 1.0
CD2 C:HIS30 3.2 36.9 1.0
CD2 C:HIS28 3.3 37.2 1.0
CE1 C:HIS28 3.3 37.1 1.0
CD2 C:HIS13 3.4 40.0 1.0
CD C:GLU107 3.9 59.0 1.0
OE2 C:GLU107 4.0 60.2 1.0
SG C:CYS24 4.2 51.2 1.0
ND1 C:HIS30 4.3 39.0 1.0
ND1 C:HIS13 4.3 41.9 1.0
CG C:HIS30 4.4 37.7 1.0
NE2 E:HIS68 4.4 42.8 1.0
ND1 C:HIS28 4.4 39.2 1.0
CG C:HIS28 4.4 40.1 1.0
CG C:HIS13 4.5 40.7 1.0
CD2 E:HIS68 4.8 41.6 1.0
CB C:CYS24 4.9 47.5 1.0

Zinc binding site 4 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 4 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn200

b:42.4
occ:1.00
 NE2 D:HIS30 2.2 42.0 1.0
NE2 D:HIS28 2.2 40.5 1.0
NE2 D:HIS13 2.4 42.7 1.0
OE2 D:GLU107 2.5 54.3 1.0
CE1 D:HIS30 3.1 40.0 1.0
CD2 D:HIS28 3.2 40.6 1.0
CE1 D:HIS28 3.2 42.9 1.0
CD2 D:HIS30 3.3 40.3 1.0
CE1 D:HIS13 3.3 36.7 1.0
CD2 D:HIS13 3.4 39.7 1.0
CD D:GLU107 3.4 52.6 1.0
CG D:GLU107 4.1 50.8 1.0
OE1 D:GLU107 4.2 53.9 1.0
ND1 D:HIS30 4.3 41.4 1.0
SG D:CYS24 4.3 51.4 1.0
ND1 D:HIS28 4.4 43.6 1.0
CG D:HIS28 4.4 43.9 1.0
CG D:HIS30 4.4 39.8 1.0
NE2 A:HIS68 4.4 40.2 1.0
ND1 D:HIS13 4.4 41.5 1.0
CG D:HIS13 4.5 39.8 1.0
CD2 A:HIS68 4.9 39.6 1.0
O F:HOH236 4.9 36.5 1.0

Zinc binding site 5 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 5 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn200

b:54.0
occ:1.00
 NE2 E:HIS28 2.3 44.5 1.0
NE2 E:HIS30 2.4 38.9 1.0
OE2 E:GLU107 2.5 57.2 1.0
NE2 E:HIS13 2.5 45.5 1.0
O C:HOH220 2.5 44.5 1.0
CE1 E:HIS30 3.3 37.7 1.0
CD2 E:HIS28 3.3 44.7 1.0
CE1 E:HIS28 3.3 44.8 1.0
CE1 E:HIS13 3.4 42.1 1.0
CD2 E:HIS13 3.4 43.8 1.0
CD2 E:HIS30 3.5 40.2 1.0
CD E:GLU107 3.5 53.9 1.0
CG E:GLU107 4.0 48.6 1.0
O C:HOH242 4.2 51.5 1.0
ND1 E:HIS28 4.4 44.6 1.0
CG E:HIS28 4.4 42.4 1.0
ND1 E:HIS30 4.4 37.7 1.0
OE1 E:GLU107 4.5 56.3 1.0
ND1 E:HIS13 4.5 44.2 1.0
NE2 C:HIS68 4.5 43.2 1.0
CG E:HIS30 4.6 39.9 1.0
CG E:HIS13 4.6 43.3 1.0
CD2 C:HIS68 4.8 41.5 1.0
SG E:CYS24 5.0 49.6 1.0

Zinc binding site 6 out of 6 in 2oba

Go back to Zinc Binding Sites List in 2oba
Zinc binding site 6 out of 6 in the Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn200

b:56.8
occ:1.00
 NE2 F:HIS30 2.3 41.9 1.0
NE2 F:HIS28 2.3 39.4 1.0
NE2 F:HIS13 2.5 42.0 1.0
OE1 F:GLU107 3.1 55.9 1.0
CE1 F:HIS28 3.2 38.8 1.0
CD2 F:HIS30 3.3 40.0 1.0
CE1 F:HIS30 3.3 40.7 1.0
CE1 F:HIS13 3.3 40.6 1.0
CD2 F:HIS28 3.4 36.5 1.0
CD2 F:HIS13 3.5 42.7 1.0
CD F:GLU107 3.9 51.8 1.0
OE2 F:GLU107 4.1 55.4 1.0
NE2 B:HIS68 4.3 44.0 1.0
ND1 F:HIS28 4.3 38.2 1.0
ND1 F:HIS30 4.4 40.3 1.0
CG F:HIS30 4.4 41.1 1.0
CG F:HIS28 4.5 40.3 1.0
ND1 F:HIS13 4.5 42.6 1.0
CG F:HIS13 4.6 43.1 1.0
CD2 B:HIS68 4.9 42.7 1.0
SG F:CYS24 4.9 51.0 1.0

Reference:

T.E.Mcgrath, G.Kisselman, K.Battaile, V.Romanov, J.Wu-Brown, J.Guthrie, C.Virag, K.Mansoury, A.M.Edwards, E.F.Pai, N.Y.Chirgadze. Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin Synthase To Be Published.
Page generated: Thu Oct 17 02:32:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy