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Zinc in PDB 2o6i: Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase

Protein crystallography data

The structure of Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase, PDB code: 2o6i was solved by I.I.Vorontsov, G.Minasov, L.Shuvalova, J.S.Brunzelle, S.Moy, F.R.Collart, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.55
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.913, 109.913, 182.412, 90.00, 90.00, 120.00
R / Rfree (%) 24.8 / 31.7

Other elements in 2o6i:

The structure of Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase (pdb code 2o6i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase, PDB code: 2o6i:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2o6i

Go back to Zinc Binding Sites List in 2o6i
Zinc binding site 1 out of 2 in the Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:68.8
occ:0.66
OD2 A:ASP183 2.1 69.2 1.0
NE2 A:HIS110 2.1 65.5 1.0
NE2 A:HIS66 2.2 62.6 1.0
OD2 A:ASP111 2.3 67.0 1.0
CG A:ASP183 2.9 66.7 1.0
CE1 A:HIS110 3.0 65.4 1.0
CD2 A:HIS110 3.1 64.0 1.0
CD2 A:HIS66 3.1 62.6 1.0
CG A:ASP111 3.2 65.8 1.0
OD1 A:ASP183 3.2 67.6 1.0
CE1 A:HIS66 3.2 62.9 1.0
OD1 A:ASP111 3.4 66.1 1.0
ND1 A:HIS110 4.1 65.7 1.0
CG A:HIS110 4.2 64.5 1.0
CG A:HIS66 4.3 62.4 1.0
CB A:ASP183 4.3 65.9 1.0
O A:HOH529 4.3 47.2 1.0
ND1 A:HIS66 4.3 62.8 1.0
CB A:ASP111 4.5 65.3 1.0
CD2 A:TYR187 4.5 62.6 1.0
CG2 A:VAL70 4.6 60.6 1.0
OE1 A:GLN48 4.8 66.2 1.0
CA A:ASP183 4.8 65.6 1.0
O A:ASP183 4.9 65.3 1.0

Zinc binding site 2 out of 2 in 2o6i

Go back to Zinc Binding Sites List in 2o6i
Zinc binding site 2 out of 2 in the Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An Enterococcus Faecalis Hd Domain Phosphohydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:74.1
occ:0.66
NE2 B:HIS66 2.0 60.3 1.0
NE2 B:HIS110 2.1 64.5 1.0
OD2 B:ASP183 2.2 66.8 1.0
OD2 B:ASP111 2.5 65.6 1.0
CE1 B:HIS66 2.9 60.8 1.0
CD2 B:HIS66 3.0 60.5 1.0
CD2 B:HIS110 3.0 64.9 1.0
CG B:ASP183 3.1 66.4 1.0
CE1 B:HIS110 3.2 64.8 1.0
OD1 B:ASP183 3.4 66.9 1.0
CG B:ASP111 3.6 66.8 1.0
O B:HOH515 3.8 65.1 1.0
ND1 B:HIS66 4.1 61.5 1.0
CG B:HIS66 4.1 61.1 1.0
CG B:HIS110 4.2 65.3 1.0
ND1 B:HIS110 4.2 65.5 1.0
OD1 B:ASP111 4.3 66.9 1.0
CB B:ASP183 4.3 66.1 1.0
CD2 B:TYR187 4.5 59.4 1.0
CG2 B:VAL70 4.5 60.2 1.0
CB B:ASP111 4.6 66.4 1.0
CA B:ASP183 4.8 66.0 1.0
O B:ASP183 4.9 65.2 1.0
OE1 B:GLN48 5.0 71.7 1.0

Reference:

I.I.Vorontsov, G.Minasov, O.Kiryukhina, J.S.Brunzelle, L.Shuvalova, W.F.Anderson. Characterization of the Deoxynucleotide Triphosphate Triphosphohydrolase (Dntpase) Activity of the EF1143 Protein From Enterococcus Faecalis and Crystal Structure of the Activator-Substrate Complex. J.Biol.Chem. V. 286 33158 2011.
ISSN: ISSN 0021-9258
PubMed: 21757692
DOI: 10.1074/JBC.M111.250456
Page generated: Wed Dec 16 03:45:33 2020

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