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Zinc in PDB 2o1q: Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution, PDB code: 2o1q was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.44 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.020, 62.020, 133.800, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 21

Other elements in 2o1q:

The structure of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution (pdb code 2o1q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution, PDB code: 2o1q:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2o1q

Go back to Zinc Binding Sites List in 2o1q
Zinc binding site 1 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn145

b:19.7
occ:1.00
ND1 A:HIS101 1.7 10.9 1.0
OXT A:ACT149 1.8 12.7 0.5
NE2 A:HIS59 2.0 22.8 1.0
NE2 A:HIS61 2.1 17.5 1.0
O A:ACT149 2.2 12.6 0.5
C A:ACT149 2.4 17.4 0.5
OXT A:ACT149 2.5 59.6 0.5
CE1 A:HIS101 2.7 26.9 1.0
C A:ACT149 2.7 59.0 0.5
CG A:HIS101 2.8 19.9 1.0
CE1 A:HIS59 2.9 17.3 1.0
CD2 A:HIS59 3.0 20.5 1.0
CD2 A:HIS61 3.0 20.8 1.0
O A:ACT149 3.1 59.6 0.5
CE1 A:HIS61 3.1 20.3 1.0
CB A:HIS101 3.4 19.1 1.0
CH3 A:ACT149 3.4 57.4 0.5
NE2 A:HIS101 3.8 22.9 1.0
CD2 A:HIS101 3.9 26.4 1.0
CH3 A:ACT149 3.9 19.5 0.5
ND1 A:HIS59 4.1 18.9 1.0
CG A:HIS59 4.1 17.6 1.0
ND1 A:HIS61 4.2 18.5 1.0
CG A:HIS61 4.2 19.3 1.0
OG1 A:THR104 4.4 21.4 1.0
CD1 A:LEU120 4.9 25.7 1.0
CA A:HIS101 4.9 16.4 1.0
CD2 A:LEU120 5.0 19.1 1.0

Zinc binding site 2 out of 3 in 2o1q

Go back to Zinc Binding Sites List in 2o1q
Zinc binding site 2 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn145

b:20.9
occ:1.00
OXT B:ACT147 1.7 15.3 0.5
ND1 B:HIS101 1.7 14.4 1.0
NE2 B:HIS61 2.0 16.9 1.0
NE2 B:HIS59 2.1 26.6 1.0
O B:ACT147 2.2 13.3 0.5
C B:ACT147 2.4 13.8 0.5
OXT B:ACT147 2.5 25.4 0.5
C B:ACT147 2.5 26.5 0.5
CE1 B:HIS101 2.5 33.5 1.0
O B:ACT147 2.7 22.9 0.5
CG B:HIS101 2.9 17.8 1.0
CE1 B:HIS61 3.0 20.8 1.0
CD2 B:HIS59 3.0 23.9 1.0
CE1 B:HIS59 3.1 18.9 1.0
CD2 B:HIS61 3.1 18.0 1.0
CH3 B:ACT147 3.3 29.0 0.5
CB B:HIS101 3.6 19.3 1.0
NE2 B:HIS101 3.7 21.4 1.0
CH3 B:ACT147 3.9 17.4 0.5
CD2 B:HIS101 3.9 21.9 1.0
ND1 B:HIS61 4.1 22.8 1.0
ND1 B:HIS59 4.2 17.0 1.0
CG B:HIS59 4.2 14.3 1.0
CG B:HIS61 4.2 19.4 1.0
OG1 B:THR104 4.3 18.4 1.0
CE B:MSE114 4.3 16.1 0.5
CD2 B:LEU120 4.8 19.6 1.0

Zinc binding site 3 out of 3 in 2o1q

Go back to Zinc Binding Sites List in 2o1q
Zinc binding site 3 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn146

b:32.2
occ:1.00
O B:HOH237 2.0 34.8 1.0
OE2 B:GLU136 2.0 23.4 1.0
OD2 B:ASP137 2.1 21.9 1.0
O B:HOH179 2.2 26.5 1.0
O B:HOH164 2.3 28.4 1.0
O B:HOH203 2.5 46.5 1.0
CD B:GLU136 2.9 23.2 1.0
CG B:ASP137 3.0 19.2 1.0
OE1 B:GLU136 3.2 20.4 1.0
OD1 B:ASP137 3.3 23.3 1.0
O B:VAL132 3.5 21.6 1.0
N B:GLY134 4.2 17.8 1.0
CG B:GLU136 4.3 16.7 1.0
O A:HOH225 4.4 27.6 0.5
CB B:ASP137 4.4 17.2 1.0
C B:VAL132 4.5 18.8 1.0
O A:HOH196 4.5 25.5 1.0
O B:HOH216 4.6 23.6 0.5
N B:ASP137 4.7 15.6 1.0
CA B:GLY134 4.7 19.1 1.0
CA B:ILE133 4.9 16.5 1.0
OD1 A:ASN98 5.0 28.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 03:45:12 2020

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